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rifoxyb1_full_scaffold_918

Search features with annotation key words

Displaying items 1-30 of 34 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifoxyb1_full_scaffold_918_1
unknown

Not on your lists

comp(3..296)
DNA (294bp) protein (98aa)

This feature has no annotations

rifoxyb1_full_scaffold_918_2
CG_Woesearch_03, Woesearchaeota, Archaea

Not on your lists

714..1271
DNA (558bp) protein (186aa)
Tax=CG_Woesearch_03
rifoxyb1_full_scaffold_918_3
CG_Woesearch_03, Woesearchaeota, Archaea

Not on your lists

1253..1735
DNA (483bp) protein (161aa)
Putative uncharacterized protein n=1 Tax=Methanoplanus limicola DSM 2279 RepID=H1YZ68_9EURY id=5103860 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein
Tax=CG_Woesearch_03
rifoxyb1_full_scaffold_918_4
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(1744..2487)
DNA (744bp) protein (248aa)
transcriptional regulator TrmB id=5093928 bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
transcriptional regulator TrmB Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
transcriptional regulator TrmB
transcriptional regulator TrmB
rifoxyb1_full_scaffold_918_5
unknown

Not on your lists

2647..3033
DNA (387bp) protein (129aa)

This feature has no annotations

rifoxyb1_full_scaffold_918_6
unknown

Not on your lists

3030..3773
DNA (744bp) protein (248aa)

This feature has no annotations

rifoxyb1_full_scaffold_918_7
CG_Pacearch_01, Pacearchaeota, Archaea

Not on your lists

comp(3848..4117)
DNA (270bp) protein (90aa)
Tax=CG_Pacearch_01
rifoxyb1_full_scaffold_918_8
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(4162..5637)
DNA (1476bp) protein (492aa)
thymidine phosphorylase; K00758 thymidine phosphorylase [EC:2.4.2.4] Tax=RBG_13_Pacearchaeota_33_26_curated
thymidine phosphorylase; K00758 thymidine phosphorylase [EC:2.4.2.4] id=5096038 bin=PER_GWF2_38_29 species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=PER_GWF2_38_29 organism_group=PER (Peregrinibacteria)
deoA; thymidine phosphorylase (EC:2.4.2.4)
deoA; thymidine phosphorylase (EC:2.4.2.4)
rifoxyb1_full_scaffold_918_9
AR13, Pacearchaeaota, DPANN, Archaea

Not on your lists

comp(5644..6654)
DNA (1011bp) protein (337aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036CCA3F
Predicted permease Tax=AR13
hypothetical protein
hypothetical protein
rifoxyb1_full_scaffold_918_10
CG_Pacearch_01, Pacearchaeota, Archaea

Not on your lists

6762..7460
DNA (699bp) protein (233aa)
id=5048829 Tax=CG_Pacearch_01
id=5048829 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rifoxyb1_full_scaffold_918_11

Not on your lists


7562..8506
DNA (945bp) protein (315aa)
50S ribosomal protein L3P {ECO:0000313|EMBL:AJS11575.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 id=5042300 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L3
50S ribosomal protein L3
rifoxyb1_full_scaffold_918_12

Not on your lists


8506..9306
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036E203C
50S ribosomal protein L4P, large subunit ribosomal protein L4e {ECO:0000313|EMBL:AJS13345.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L4
50S ribosomal protein L4
rifoxyb1_full_scaffold_918_13

Not on your lists


9303..9545
DNA (243bp) protein (81aa)
50S ribosomal protein L23P n=1 Tax=Thermococcus sp. CL1 RepID=I3ZSZ8_9EURY
Large subunit ribosomal protein L23 {ECO:0000313|EMBL:KHO50293.1}; TaxID=1579372 species="Archaea.;" source="archaeon GW2011_AR13.;"
50S ribosomal protein L23
50S ribosomal protein L23
rifoxyb1_full_scaffold_918_14

Not on your lists


9545..10240
DNA (696bp) protein (232aa)
50S ribosomal protein L2P {ECO:0000313|EMBL:AJS11921.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L2 id=5800061 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L2
50S ribosomal protein L2
DPANN Jill Banfield (11/29/14)
rifoxyb1_full_scaffold_918_15

Not on your lists


10242..10643
DNA (402bp) protein (134aa)
30S ribosomal protein S19 n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=RS19_METMA
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rps19p; 30S ribosomal protein S19
rps19p; 30S ribosomal protein S19
rifoxyb1_full_scaffold_918_16

Not on your lists


10646..11272
DNA (627bp) protein (209aa)
50S ribosomal protein L22 {ECO:0000256|RuleBase:RU004007}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rifoxyb1_full_scaffold_918_17

Not on your lists


11330..12001
DNA (672bp) protein (224aa)
30S ribosomal protein S3 n=1 Tax=uncultured organism RepID=U3GU39_9ZZZZ
30S ribosomal protein S3 {ECO:0000313|EMBL:AJS11622.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S3
30S ribosomal protein S3
rifoxyb1_full_scaffold_918_18

Not on your lists


11998..12195
DNA (198bp) protein (66aa)
50S ribosomal protein L29P {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1579372 species="Archaea.;" source="archaeon GW2011_AR13.;"
rifoxyb1_full_scaffold_918_19
AR13, Pacearchaeaota, DPANN, Archaea

Not on your lists

12198..12497
DNA (300bp) protein (100aa)
Protein translation factor SUI1 homolog n=1 Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6VQK7_9EURY
translation initiation factor Sui1; K03113 translation initiation factor 1 Tax=AR13
translation initiation factor Sui1
translation initiation factor Sui1
rifoxyb1_full_scaffold_918_20

Not on your lists


12532..12885
DNA (354bp) protein (118aa)
30S ribosomal protein S17P n=1 Tax=Methanobacterium formicicum DSM 3637 RepID=K2RT69_METFO
30S ribosomal protein S17P {ECO:0000256|HAMAP-Rule:MF_01345}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
ribosomal protein S17P Rps17p
ribosomal protein S17P Rps17p
rifoxyb1_full_scaffold_918_21

Not on your lists


12882..13283
DNA (402bp) protein (134aa)
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 id=5046849 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
50S ribosomal protein L14P
50S ribosomal protein L14P
rifoxyb1_full_scaffold_918_22

Not on your lists


13285..13722
DNA (438bp) protein (146aa)
50S ribosomal protein L24P {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 id=5042312 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rpl24p; 50S ribosomal protein L24
rpl24p; 50S ribosomal protein L24
rifoxyb1_full_scaffold_918_23
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

13722..14372
DNA (651bp) protein (217aa)
30S ribosomal protein S4e n=1 Tax=nanoarchaeote Nst1 RepID=R1FU02_9ARCH
SSU ribosomal protein s4e; K02987 small subunit ribosomal protein S4e Tax=RBG_13_Pacearchaeota_33_26_curated
rps4e; 30S ribosomal protein S4e
rps4e; 30S ribosomal protein S4e
rifoxyb1_full_scaffold_918_24

Not on your lists


14369..14929
DNA (561bp) protein (187aa)
50S ribosomal protein L5 n=1 Tax=nanoarchaeote Nst1 RepID=R1G3A2_9ARCH
50S ribosomal protein L5P {ECO:0000313|EMBL:AJS11694.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
large subunit ribosomal protein L5
large subunit ribosomal protein L5
rifoxyb1_full_scaffold_918_25
CG_Pacearch_01, Pacearchaeota, Archaea

Not on your lists

14926..15156
DNA (231bp) protein (77aa)
hypothetical protein; K02954 small subunit ribosomal protein S14 Tax=CG_Pacearch_01
hypothetical protein; K02954 small subunit ribosomal protein S14 id=5041773 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
SSU ribosomal protein S14P
SSU ribosomal protein S14P
rifoxyb1_full_scaffold_918_26

Not on your lists


15180..15560
DNA (381bp) protein (127aa)
30S ribosomal protein S8 n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RS8_NANEQ
30S ribosomal protein S8P, small subunit ribosomal protein S8 {ECO:0000313|EMBL:AJS12907.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rps8p; 30S ribosomal protein S8P
rps8p; 30S ribosomal protein S8P
rifoxyb1_full_scaffold_918_27

Not on your lists


15560..16102
DNA (543bp) protein (181aa)
50S ribosomal protein L6 n=5 Tax=Thermococcus RepID=RL6_PYRKO id=5103268 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L6P {ECO:0000313|EMBL:AJS11564.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L6
50S ribosomal protein L6
rifoxyb1_full_scaffold_918_28

Not on your lists


16103..16495
DNA (393bp) protein (131aa)
50S ribosomal protein L32e n=1 Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6VQL6_9EURY
50S ribosomal protein L32, large subunit ribosomal protein L32e {ECO:0000313|EMBL:KHO55522.1}; TaxID=1579377 species="Archaea.;" source="archaeon GW2011_AR19.;"
50S ribosomal protein L32e
50S ribosomal protein L32e
rifoxyb1_full_scaffold_918_29

Not on your lists

16492..16899
DNA (408bp) protein (136aa)
50S ribosomal protein L19e n=2 Tax=Halobacterium salinarum RepID=RL19E_HALSA
Marine sediment metagenome DNA, contig: S12H4_S16718 {ECO:0000313|EMBL:GAJ13137.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
rpl19e; 50S ribosomal protein L19
rpl19e; 50S ribosomal protein L19
rifoxyb1_full_scaffold_918_30

Not on your lists


16896..17384
DNA (489bp) protein (163aa)
50S ribosomal protein L18P n=2 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IBI0_ACIB4
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L18
50S ribosomal protein L18
Displaying items 1-30 of 34 in total

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