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RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_1434

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Displaying 21 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_1434_1
Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(3..1007)
DNA (1005bp) protein (335aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (
tRNA-i(6)a37 thiotransferase enzyme miab
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_1434_2
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

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comp(1189..1836)
DNA (648bp) protein (216aa)
Putative uncharacterized protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Putative uncharacterized protein id=5095891 bin=PER_GWF2_38_29 species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=PER_GWF2_38_29 organism_group=PER (Peregrinibacteria)
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_1434_3
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

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1999..2226
DNA (228bp) protein (76aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_1434_4
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

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2226..2426
DNA (201bp) protein (67aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_1434_5
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

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2703..3587
DNA (885bp) protein (295aa)
ABC-type metal ion transport system, periplasmic component/surface adhesin n=1 Tax=Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628) RepID=G7WA40_DESOD
ABC-type metal ion transport system, periplasmic component/surface adhesin; K09815 zinc transport system substrate-binding protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
metal ion ABC transporter substrate-binding protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_1434_6
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

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3591..4250
DNA (660bp) protein (220aa)
ABC transporter; K09817 zinc transport system ATP-binding protein [EC:3.6.3.-] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
ABC-type Mn/Zn transport system, ATPase component n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0K068_9FIRM
ABC transporter
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_1434_7
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

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4247..5053
DNA (807bp) protein (269aa)
ABC-3 protein n=1 Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8W434_DESAS
ABC transporter; K09816 zinc transport system permease protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
ABC transporter
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_1434_8
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

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comp(5065..5802)
DNA (738bp) protein (246aa)
two component transcriptional regulator, arac family Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
AraC family transcriptional regulator id=3241549 bin=GWC2_Elusimicrobia_51_8 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=GWC2_Elusimicrobia_51_8 organism_group=Elusimicrobia
two component transcriptional regulator, arac family
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_1434_9
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

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comp(5886..6311)
DNA (426bp) protein (142aa)
desulfoferrodoxin ferrous iron-binding region; K05919 superoxide reductase [EC:1.15.1.2] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Desulfoferrodoxin ferrous iron-binding region id=4054855 bin=GWF2_OP3_38_59 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
desulfoferrodoxin ferrous iron-binding region
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_1434_10
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

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comp(6348..6797)
DNA (450bp) protein (150aa)
id=4054856 Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
id=4054856 bin=GWF2_OP3_38_59 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_1434_11
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

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comp(7073..7465)
DNA (393bp) protein (131aa)
response regulator receiver protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
response regulator receiver protein
Response regulator containing sigma 54 interaction domain id=4260205 bin=GWF2_OP9_related_35_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_1434_12
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

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comp(7462..8916)
DNA (1455bp) protein (485aa)
PAS/PAC domain-containing sensor histidine kinase Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
PAS/PAC sensor signal transduction histidine kinase id=4128196 bin=GWF2_Nitrospirae_44_13 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
PAS/PAC domain-containing sensor histidine kinase
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_1434_13
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

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comp(8975..9121)
DNA (147bp) protein (49aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_1434_14
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(9372..9983)
DNA (612bp) protein (204aa)
TrpR binding protein WrbA; K03809 Trp repressor binding protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Flavoprotein WrbA id=4828363 bin=GWC2_Syntrophus__56_31 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
wrbA; NAD(P)H:quinone oxidoreductase
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_1434_15
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

10371..10913
DNA (543bp) protein (181aa)
ABC transporter; K09817 zinc transport system ATP-binding protein [EC:3.6.3.-] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
ABC transporter related n=1 Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8W433_DESAS
ABC transporter
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_1434_16
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

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10897..12624
DNA (1728bp) protein (576aa)
sensory box protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Multi-sensor hybrid histidine kinase id=2588584 bin=GWF2_Lentisphaerae_50_93 species=unknown genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
sensory box protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_1434_17
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

12715..13395
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9) RepID=H8XR11_FLAIG
hypothetical protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
hypothetical protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_1434_18
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

13421..13837
DNA (417bp) protein (139aa)
id=4260110 Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
id=4260110 bin=GWF2_OP9_related_35_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_1434_19
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

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13866..14015
DNA (150bp) protein (50aa)
hypothetical protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
hypothetical protein id=5079310 bin=GWF1_Burkholderiales_GWF1_66_17 species=Oxalobacteraceae bacterium IMCC9480 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_1434_20
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

14032..14814
DNA (783bp) protein (261aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_1434_21
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(14915..15529)
DNA (615bp) protein (205aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Displaying 21 items

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