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RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_220

Search features with annotation key words

Displaying items 1-30 of 76 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_220_1
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(3..128)
DNA (126bp) protein (42aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_220_2
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(246..479)
DNA (234bp) protein (78aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_220_3
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(652..1434)
DNA (783bp) protein (261aa)
truA; tRNA pseudouridine synthase A (EC:5.4.99.12); K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
truA; tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA pseudouridine synthase A id=2079759 bin=GWB2_CP_45_9 species=Thermoanaerobacterium thermosaccharolyticum genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_220_4
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(1447..1863)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AUC1_9BACT
hypothetical protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
hypothetical protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_220_5
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(1844..2080)
DNA (237bp) protein (79aa)
Uncharacterized protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Uncharacterized protein id=5009804 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_220_6
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(2073..2285)
DNA (213bp) protein (71aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_220_7
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(2315..2641)
DNA (327bp) protein (109aa)
thioredoxin n=1 Tax=Paracoccus zeaxanthinifaciens RepID=UPI0003B73675
thioredoxin; K03671 thioredoxin 1 Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
thioredoxin
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_220_8
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

2693..3511
DNA (819bp) protein (273aa)
hypothetical protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Uncharacterized protein id=3947540 bin=GWF2_OP9_related_35_9 species=unknown genus=Thermoanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
hypothetical protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_220_9
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

3566..4003
DNA (438bp) protein (146aa)
ribosomal-protein-alanine acetyltransferase; K03789 ribosomal-protein-alanine N-acetyltransferase [EC:2.3.1.128] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
ribosomal-protein-alanine acetyltransferase (EC:2.3.1.128)
Ribosomal-protein-alanine acetyltransferase n=8 Tax=Thermoanaerobacter RepID=B0K3M5_THEPX
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_220_10
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

3996..6437
DNA (2442bp) protein (814aa)
Homocysteine S-methyltransferase/B12 binding domain/Pterin binding enzyme n=1 Tax=Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1) RepID=L0K7J3_HALHC
Homocysteine S-methyltransferase/B12 binding domain/Pterin binding enzyme Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Homocysteine S-methyltransferase/B12 binding domain/Pterin binding enzyme
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_220_11
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(6434..7573)
DNA (1140bp) protein (380aa)
Uncharacterized protein n=1 Tax=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) RepID=U9TKY6_RHIID
hypothetical protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
serine/threonine protein kinase, bacterial
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_220_12
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(7774..9042)
DNA (1269bp) protein (423aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_220_13
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

9297..10613
DNA (1317bp) protein (439aa)
Outer membrane efflux protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRF7_9FIRM
type I secretion outer membrane protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
outer membrane efflux protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_220_14
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

10686..11669
DNA (984bp) protein (328aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) RepID=B3QYY1_CHLT3
RND family efflux transporter MFP subunit Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RND family efflux transporter MFP subunit
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_220_15
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

11662..12369
DNA (708bp) protein (236aa)
ABC-type antimicrobial peptide transport system, ATPase component n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8M1P1_CLOCD
antimicrobial peptide ABC transporter ATPase; K02003 putative ABC transport system ATP-binding protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
antimicrobial peptide ABC transporter ATPase
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_220_16
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

12366..13571
DNA (1206bp) protein (402aa)
hypothetical protein; K02004 putative ABC transport system permease protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Efflux ABC transporter, permease protein id=3730995 bin=GWF2_Nitrospirae_44_13 species=Megasphaera micronuciformis genus=Megasphaera taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_220_17
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(13581..14075)
DNA (495bp) protein (165aa)
redoxin domain-containing protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen id=2200774 bin=GWB2_Nitrospirae_rel_47_37 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
redoxin domain-containing protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_220_18
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(14224..15084)
DNA (861bp) protein (287aa)
prephenate dehydrogenase (EC:1.3.1.12); K04517 prephenate dehydrogenase [EC:1.3.1.12] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
prephenate dehydrogenase (EC:1.3.1.12)
Prephenate dehydrogenase n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RDE1_AMMDK
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_220_19
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

15246..15803
DNA (558bp) protein (186aa)
Elongation factor P n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CL80_DESK7
elongation factor P; K02356 elongation factor P Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
elongation factor P
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_220_20
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

15824..16282
DNA (459bp) protein (153aa)
Pyruvate carboxylase subunit B n=1 Tax=Desulfotomaculum hydrothermale Lam5 = DSM 18033 RepID=K8EBA4_9FIRM
accB; Biotin carboxyl carrier protein; K02160 acetyl-CoA carboxylase biotin carboxyl carrier protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
accB; Biotin carboxyl carrier protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_220_21
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

16279..18015
DNA (1737bp) protein (579aa)
single-stranded-DNA-specific exonuclease RecJ; K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Thermincola potens (strain JR) RepID=D5XEJ8_THEPJ
single-stranded-DNA-specific exonuclease RecJ
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_220_22
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(17976..19814)
DNA (1839bp) protein (613aa)
glutamine--fructose-6-phosphate transaminase; K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] id=2161372 bin=GWE2_RBX1_39_32 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
glutamine--fructose-6-phosphate transaminase
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_220_23
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(19828..21168)
DNA (1341bp) protein (447aa)
extracellular solute-binding protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Extracellular solute-binding protein family 1 id=3914660 bin=GWF2_OP9_related_35_9 species=Thermoanaerobacterium saccharolyticum genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
extracellular solute-binding protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_220_24
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

21348..21698
DNA (351bp) protein (117aa)
seg 101..127 Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
seg 101..127 id=75091 bin=ACD52 species=ACD52 genus=ACD52 taxon_order=ACD52 taxon_class=ACD52 phylum=OP11 tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_220_25
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(21705..22580)
DNA (876bp) protein (292aa)
riboflavin biosynthesis protein RibF (EC:2.7.1.26 2.7.7.2); K11753 riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
riboflavin biosynthesis protein RibF (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein RibF n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XXM5_9BACT
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_220_26
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(22593..23744)
DNA (1152bp) protein (384aa)
Soluble hydrogenase, small (42 kd) subunit, putative n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0TAQ7_HELMI
soluble hydrogenase, small (42 kd) subunit Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
soluble hydrogenase, small (42 kd) subunit
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_220_27
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists


comp(23837..24385)
DNA (549bp) protein (183aa)
30S ribosomal protein S9 n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RAV6_AMMDK
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
30S ribosomal protein S9
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_220_28
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists


comp(24400..24825)
DNA (426bp) protein (142aa)
50S ribosomal protein L13 n=1 Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=RL13_DICTD
rplM; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
rplM; 50S ribosomal protein L13
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_220_29
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists


comp(24895..25242)
DNA (348bp) protein (116aa)
50S ribosomal protein L17 n=1 Tax=Clostridium sp. CAG:217 RepID=R6ILT7_9CLOT
rplQ; 50S ribosomal protein L17 Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
rplQ; 50S ribosomal protein L17
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_220_30
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(25226..26215)
DNA (990bp) protein (330aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6) Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
DNA-directed RNA polymerase alpha subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VMW6_CLOSH
Displaying items 1-30 of 76 in total

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