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RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_200

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_200_1
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

112..324
DNA (213bp) protein (71aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_200_2
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(321..860)
DNA (540bp) protein (180aa)
mscC4; protein MscC4; K03442 small conductance mechanosensitive channel Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
MscS Mechanosensitive ion channel id=3572167 bin=GWF2_OP3_43_52 species=Saccharophagus degradans genus=Saccharophagus taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
mscC4; protein MscC4
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_200_3
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

999..1778
DNA (780bp) protein (260aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_200_4
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(1804..3132)
DNA (1329bp) protein (443aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_200_5
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(3275..5245)
DNA (1971bp) protein (657aa)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI000382B969
DNA ligase, NAD-dependent Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
DNA ligase, NAD-dependent
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_200_6
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

5456..7783
DNA (2328bp) protein (776aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_200_7
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(7796..8554)
DNA (759bp) protein (253aa)
tRNA pseudouridine synthase B; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
tRNA pseudouridine synthase B n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2BE0A
tRNA pseudouridine synthase B
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_200_8
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(8604..9557)
DNA (954bp) protein (318aa)
phosphoesterase RecJ; K06881 phosphoesterase RecJ domain-containing protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Phosphoesterase RecJ domain protein id=4554259 bin=GWC2_Deltaproteobacteria_42_51 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
phosphoesterase RecJ
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_200_9
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(9554..9901)
DNA (348bp) protein (116aa)
Ribosome-binding factor A n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=RBFA_HALOH
rbfA; ribosome-binding factor A; K02834 ribosome-binding factor A Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
rbfA; ribosome-binding factor A
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_200_10
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(9898..11985)
DNA (2088bp) protein (696aa)
Translation initiation factor IF-2 n=1 Tax=Clostridium pasteurianum DSM 525 RepID=L7EQX6_CLOPA
initiation factor 2 Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
infB; translation initiation factor IF-2
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_200_11
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(11989..13071)
DNA (1083bp) protein (361aa)
transcription termination factor NusA; K02600 N utilization substance protein A Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
NusA antitermination factor id=1893590 bin=GWD2_RBX1-related_39_127 species=Clostridium thermocellum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
transcription termination factor NusA
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_200_12
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

13268..14614
DNA (1347bp) protein (449aa)
hypothetical protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
cro:ROD_20891 hypothetical protein id=125691 bin=ACD79 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=ACD79 organism_group=Chlamydiae organism_desc=Novel, branching deeply from Chlamydiae
hypothetical protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_200_13
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

14611..15939
DNA (1329bp) protein (443aa)
radical SAM protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
cro:ROD_20881 hypothetical protein id=127505 bin=ACD79 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=ACD79 organism_group=Chlamydiae organism_desc=Novel, branching deeply from Chlamydiae
radical SAM protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_200_14
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

15929..16669
DNA (741bp) protein (247aa)
hypothetical protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Putative uncharacterized protein id=4197292 bin=GWF2_Lentisphaerae_57_35 species=Leptolyngbya sp. PCC 7375 genus=Leptolyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
hypothetical protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_200_15
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

16671..18314
DNA (1644bp) protein (548aa)
GH3 auxin-responsive promoter Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
GH3 auxin-responsive promoter id=4197294 bin=GWF2_Lentisphaerae_57_35 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
GH3 auxin-responsive promoter
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_200_16
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

18307..19425
DNA (1119bp) protein (373aa)
Putative uncharacterized protein n=1 Tax=bacterium Ellin514 RepID=B9XDZ5_9BACT id=127493 bin=ACD79 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=ACD79 organism_group=Chlamydiae organism_desc=Novel, branching deeply from Chlamydiae
hypothetical protein
Putative uncharacterized protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_200_17
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(19484..20848)
DNA (1365bp) protein (455aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_200_18
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(20845..22413)
DNA (1569bp) protein (523aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_200_19
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

22488..23900
DNA (1413bp) protein (471aa)
D-lactate dehydrogenase; K00102 D-lactate dehydrogenase (cytochrome) [EC:1.1.2.4] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
D-lactate dehydrogenase (Cytochrome) n=1 Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) RepID=B3QX64_CHLT3
D-lactate dehydrogenase
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_200_20
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

23973..28079
DNA (4107bp) protein (1369aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_200_21
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(28051..28875)
DNA (825bp) protein (275aa)
radical SAM protein; K04070 putative pyruvate formate lyase activating enzyme [EC:1.97.1.4] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
radical SAM domain protein; K04070 putative pyruvate formate lyase activating enzyme [EC:1.97.1.4] id=24610475 bin=RAAC11 species=Clostridium intestinale genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RAAC11 organism_group=Unknown_CP
radical SAM protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_200_22
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(28860..30302)
DNA (1443bp) protein (481aa)
glgA-2; glycogen synthase; K00703 starch synthase [EC:2.4.1.21] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Glycogen synthase id=1750267 bin=GWE2_RBX1_39_32 species=Syntrophothermus lipocalidus genus=Syntrophothermus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
glgA-2; glycogen synthase
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_200_23
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(30356..32821)
DNA (2466bp) protein (822aa)
nucleotidyltransferase Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Nucleotidyl transferase id=4834345 bin=GWC2_Deltaproteobacteria_42_51 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
nucleotidyltransferase
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_200_24
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(32898..34478)
DNA (1581bp) protein (527aa)
hypothetical protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Putative uncharacterized protein id=2686539 bin=GWF2_OP9_related_35_9 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
hypothetical protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_200_25
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(34500..35501)
DNA (1002bp) protein (334aa)
hypothetical protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Putative uncharacterized protein id=1937666 bin=GWB2_CP_45_9 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
hypothetical protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_200_26
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(35547..36581)
DNA (1035bp) protein (345aa)
galactose-1-phosphate uridylyltransferase Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Galactose-1-phosphate uridylyltransferase id=1750263 bin=GWE2_RBX1_39_32 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
galactose-1-phosphate uridylyltransferase
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_200_27
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(36598..38736)
DNA (2139bp) protein (713aa)
4-alpha-glucanotransferase n=1 Tax=Nitrospina gracilis 3/211 RepID=M1YXJ0_9BACT
4-alpha-glucanotransferase Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
4-alpha-glucanotransferase
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_200_28
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(38740..40890)
DNA (2151bp) protein (717aa)
amylopullulanase Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Amylopullulanase id=4319235 bin=GWC2_Nitrospirae-rel_56_14 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
amylopullulanase
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_200_29
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

40949..41650
DNA (702bp) protein (234aa)
Bp26: periplasmic immunogenic protein n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LJT8_THEPS
bp26: periplasmic immunogenic protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
bp26: periplasmic immunogenic protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_200_30
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(41631..41870)
DNA (240bp) protein (80aa)
hypothetical protein; K09131 hypothetical protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
UPF0235 protein Kcr_0466 id=3683886 bin=GWF2_Nitrospirae_44_13 species=Candidatus Korarchaeum cryptofilum genus=Candidatus Korarchaeum taxon_order=unknown taxon_class=unknown phylum=Korarchaeota tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
Displaying items 1-30 of 47 in total

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