ggKbase home page

RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_561

Search features with annotation key words

Displaying 26 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_561_1
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

3..563
DNA (561bp) protein (187aa)
glutamate synthase (EC:1.4.7.1); K00284 glutamate synthase (ferredoxin) [EC:1.4.7.1] Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
glutamate synthase (EC:1.4.7.1)
Glutamate synthase (Ferredoxin) id=4321230 bin=GWC2_OP3_44_8 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_561_2
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

556..1980
DNA (1425bp) protein (475aa)
glutamate synthase (NADH) small subunit (EC:1.4.1.14 1.4.1.13) Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
glutamate synthase (NADH) small subunit (EC:1.4.1.14 1.4.1.13)
Glutamate synthase, small subunit id=4123542 bin=GWF2_OP3_43_52 species=Clostridium ljungdahlii genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_561_3
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

comp(1865..2527)
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EYN3_9BACT
hypothetical protein Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
hypothetical protein
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_561_4
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

2775..4319
DNA (1545bp) protein (515aa)
glycosyl transferase family protein Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
Dolichyl-phosphate-mannose-protein mannosyltransferase family protein id=4151416 bin=GWC2_Deltaproteobacteria_42_51 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
hypothetical protein
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_561_5
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

4349..5071
DNA (723bp) protein (241aa)
Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_561_6
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

comp(5082..5969)
DNA (888bp) protein (296aa)
dihydroorotate dehydrogenase 1B; K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
Dihydroorotate dehydrogenase n=1 Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8W0A6_DESAS
dihydroorotate dehydrogenase 1B
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_561_7
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

6086..7714
DNA (1629bp) protein (543aa)
Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_561_8
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

comp(7618..8436)
DNA (819bp) protein (273aa)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00037B9EF8
oxidoreductase FAD/NAD(P)-binding subunit; K02823 dihydroorotate dehydrogenase electron transfer subunit Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
oxidoreductase FAD/NAD(P)-binding subunit
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_561_9
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

8530..13077
DNA (4548bp) protein (1516aa)
Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_561_10
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

13198..13611
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1ZRV0_9BACT
hypothetical protein Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
hypothetical protein
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_561_11
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

comp(13620..14210)
DNA (591bp) protein (197aa)
fliA; RNA polymerase sigma factor for flagellar operon FliA; K02405 RNA polymerase sigma factor for flagellar operon FliA Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
RNA polymerase sigma factor id=1750195 bin=GWE2_RBX1_39_32 species=Eubacterium ventriosum genus=Eubacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
fliA; RNA polymerase sigma factor for flagellar operon FliA
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_561_12
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

comp(14211..14435)
DNA (225bp) protein (75aa)
Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_561_13
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

comp(14463..16547)
DNA (2085bp) protein (695aa)
flagellar biosynthesis protein FlhA; K02400 flagellar biosynthesis protein FlhA Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
Flagellar biosynthesis protein FlhA id=1750193 bin=GWE2_RBX1_39_32 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
flagellar biosynthesis protein FlhA
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_561_14
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

comp(16560..17669)
DNA (1110bp) protein (370aa)
flagellar biosynthetic protein FlhB; K02401 flagellar biosynthetic protein FlhB Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
Flagellar biosynthetic protein FlhB id=1750192 bin=GWE2_RBX1_39_32 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
flagellar biosynthetic protein FlhB
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_561_15
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

comp(17684..18463)
DNA (780bp) protein (260aa)
flagellar biosynthetic protein FliR Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
fliR; flagellar biosynthesis protein FliR; K02421 flagellar biosynthetic protein FliR id=24608794 bin=RAAC11 species=Brevibacillus sp. BC25 genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RAAC11 organism_group=Unknown_CP
flagellar biosynthetic protein FliR
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_561_16
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

comp(18466..18735)
DNA (270bp) protein (90aa)
fliQ; flagellar biosynthesis protein; K02420 flagellar biosynthetic protein FliQ Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
fliQ; flagellar biosynthesis protein
Flagellar biosynthesis protein FliQ id=3503877 bin=GWF2_OP9-related_38_17 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_561_17
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

comp(18747..19478)
DNA (732bp) protein (244aa)
fliP; flagellar biosynthetic protein FliP Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
Flagellar biosynthetic protein FliP id=1808606 bin=GWD2_RBX1-related_39_127 species=unknown genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
flagellar biosynthetic protein FliP
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_561_18
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

comp(19475..19774)
DNA (300bp) protein (100aa)
Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_561_19
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

comp(19791..20081)
DNA (291bp) protein (97aa)
fliN; flagellar motor switch protein FliN; K02417 flagellar motor switch protein FliN/FliY Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
fliN; flagellar motor switch protein FliN
flagellar motor switch protein FliN id=24608799 bin=RAAC11 species=Thermoanaerobacterium thermosaccharolyticum genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=RAAC11 organism_group=Unknown_CP
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_561_20
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

20499..21086
DNA (588bp) protein (196aa)
Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_561_21
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

21225..21425
DNA (201bp) protein (67aa)
Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_561_22
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

21454..22905
DNA (1452bp) protein (484aa)
type I restriction-modification system, M subunit (EC:2.1.1.72); K03427 type I restriction enzyme M protein [EC:2.1.1.72] Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
type I restriction-modification system, M subunit (EC:2.1.1.72)
Type I restriction system, N-6 adenine-specific DNA methylase subunit M id=4071398 bin=GWF2_CPR3_35_18 species=ACD28 genus=ACD28 taxon_order=ACD28 taxon_class=ACD28 phylum=PER tax=GWF2_CPR3_35_18 organism_group=CPR3
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_561_23
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

22902..23912
DNA (1011bp) protein (337aa)
hypothetical protein Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
Putative uncharacterized protein id=2165833 bin=GWE2_Spirochaete_31_10 species=Haliscomenobacter hydrossis genus=Haliscomenobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWE2_Spirochaete_31_10 organism_group=Spirochaetes organism_desc=Good +
hypothetical protein
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_561_24
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

23909..25462
DNA (1554bp) protein (518aa)
Putative ATP-dependent endonuclease of the OLD family n=1 Tax=Thermus scotoductus (strain ATCC 700910 / SA-01) RepID=E8PLM2_THESS
putative ATP-dependent endonuclease of the OLD family Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
OLD family ATP-dependent endonuclease
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_561_25
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

25510..26706
DNA (1197bp) protein (399aa)
Restriction modification system DNA specificity domain protein n=1 Tax=Crinalium epipsammum PCC 9333 RepID=K9W8E1_9CYAN
restriction modification system DNA specificity domain-containing protein Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
restriction modification system DNA specificity domain-containing protein
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_561_26
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

26719..29046
DNA (2328bp) protein (776aa)
EcoEI R domain protein Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
Type I restriction system, subunit R id=2084378 bin=GWE2_CPR3_35_7 species=Sulfurimonas gotlandica genus=Sulfurimonas taxon_order=Campylobacterales taxon_class=Epsilonproteobacteria phylum=Proteobacteria tax=GWE2_CPR3_35_7 organism_group=CPR3 organism_desc=Good
EcoEI R domain protein
Displaying 26 items

View Taxonomy