ggKbase home page

RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_261

Search features with annotation key words

Displaying items 1-30 of 85 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_261_1
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

comp(2..727)
DNA (726bp) protein (242aa)
Fic family protein Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
Fic family protein id=1764443 bin=GWE2_RBX1_39_32 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
Fic family protein
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_261_2
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

823..1980
DNA (1158bp) protein (386aa)
M23B-like peptidase Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
M23B-like peptidase id=3953607 bin=GWF2_OP9-related_38_17 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
M23B-like peptidase
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_261_3
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

2015..3187
DNA (1173bp) protein (391aa)
carboxyl-terminal protease; K03797 carboxyl-terminal processing protease [EC:3.4.21.102] Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
Carboxyl-terminal protease id=2018560 bin=GWE2_RBX1_39_32 species=Deferribacter desulfuricans genus=Deferribacter taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
carboxyl-terminal protease
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_261_4
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

3187..4239
DNA (1053bp) protein (351aa)
Bifunctional phosphoglucose/phosphomannose isomerase (EC:5.3.1.8 5.3.1.9) Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
Bifunctional phosphoglucose/phosphomannose isomerase (EC:5.3.1.8 5.3.1.9)
Bifunctional phosphoglucose/phosphomannose isomerase n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LWH6_TEPAE
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_261_5
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

4239..5318
DNA (1080bp) protein (360aa)
Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) (EC:5.4.2.8) Tax=RIFOXYB
Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) (EC:5.4.2.8)
Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (EIF-2Bgamma/eIF-2Bepsilon) n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EVF9_9BACT
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_261_6
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

5311..6579
DNA (1269bp) protein (423aa)
histidinol dehydrogenase (EC:1.1.1.23); K00013 histidinol dehydrogenase [EC:1.1.1.23] Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
histidinol dehydrogenase (EC:1.1.1.23)
Histidinol dehydrogenase n=1 Tax=Thermoanaerobacter italicus (strain DSM 9252 / Ab9) RepID=D3T4B0_THEIA
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_261_7
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

comp(6560..7471)
DNA (912bp) protein (304aa)
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase; K00791 tRNA dimethylallyltransferase [EC:2.5.1.75] Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
tRNA dimethylallyltransferase n=1 Tax=Bacillus megaterium (strain DSM 319) RepID=D5DKS7_BACMD
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_261_8
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

comp(7431..7937)
DNA (507bp) protein (169aa)
3-isopropylmalate dehydratase, small subunit; K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
3-isopropylmalate dehydratase small subunit n=1 Tax=Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) RepID=D7CKQ9_SYNLT
3-isopropylmalate dehydratase, small subunit
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_261_9
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

comp(7950..9209)
DNA (1260bp) protein (420aa)
3-isopropylmalate dehydratase (EC:4.2.1.33); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
3-isopropylmalate dehydratase (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0AZY9_SYNWW
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_261_10
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

comp(9238..10152)
DNA (915bp) protein (305aa)
Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_261_11
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

10214..10969
DNA (756bp) protein (252aa)
RNAse III (EC:3.1.26.3); K03685 ribonuclease III [EC:3.1.26.3] Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
RNAse III (EC:3.1.26.3)
hypothetical protein n=1 Tax=Orenia marismortui RepID=UPI00036E3449
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_261_12
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

10960..12249
DNA (1290bp) protein (430aa)
dihydroorotase (EC:3.5.2.3); K01465 dihydroorotase [EC:3.5.2.3] Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
dihydroorotase (EC:3.5.2.3)
Dihydroorotase n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LZ27_CLOCD
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_261_13
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

12335..13303
DNA (969bp) protein (323aa)
Type IV-A pilus assembly ATPase PilB n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YIG2_THEYD
pilB2; type IV-A pilus assembly ATPase PilB; K02652 type IV pilus assembly protein PilB Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
pilB2; type IV-A pilus assembly ATPase PilB
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_261_14
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

comp(13296..13592)
DNA (297bp) protein (99aa)
Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_261_15
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

13685..13885
DNA (201bp) protein (67aa)
Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_261_16
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

14152..19560
DNA (5409bp) protein (1803aa)
Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_261_17
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

comp(19579..21105)
DNA (1527bp) protein (509aa)
Competence ATPase ComM n=2 Tax=Geobacter sulfurreducens RepID=D7AF41_GEOSK
Mg chelatase-like protein; K07391 magnesium chelatase family protein Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
comM; competence ATPase ComM
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_261_18
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

comp(21120..21488)
DNA (369bp) protein (123aa)
UPF0102 protein BN670_00144 n=1 Tax=Clostridium sp. CAG:470 RepID=R7FEU0_9CLOT
hypothetical protein; K07460 putative endonuclease Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
hypothetical protein
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_261_19
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

comp(21572..22306)
DNA (735bp) protein (245aa)
Hypothetical cytosolic protein n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LTT2_SYNAS
hypothetical protein; K09740 hypothetical protein Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
ApbE family lipoprotein
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_261_20
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

comp(22318..22944)
DNA (627bp) protein (209aa)
imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19); K01693 imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
hisB; imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
Imidazoleglycerol-phosphate dehydratase n=2 Tax=Lachnospiraceae RepID=F7JWH2_9FIRM
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_261_21
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

comp(22967..23302)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AYE9_9CLOT
transcriptional modulator of MazE/toxin MazF Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
transcriptional modulator of MazE/toxin MazF
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_261_22
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

comp(23280..23522)
DNA (243bp) protein (81aa)
Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_261_23
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

comp(23519..24292)
DNA (774bp) protein (258aa)
Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_261_24
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

24676..25407
DNA (732bp) protein (244aa)
Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_261_25
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

comp(25504..26532)
DNA (1029bp) protein (343aa)
Holliday junction ATP-dependent DNA helicase RuvB n=5 Tax=Veillonella RepID=E1L7Y1_9FIRM
Holliday junction DNA helicase, RuvB subunit Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
Holliday junction DNA helicase, RuvB subunit
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_261_26
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

comp(26525..28642)
DNA (2118bp) protein (706aa)
Lytic transglycosylase catalytic; K08309 soluble lytic murein transglycosylase [EC:3.2.1.-] Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
lytic murein transglycosylase id=24610268 bin=RAAC11 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=RAAC11 organism_group=Unknown_CP
Lytic transglycosylase catalytic
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_261_27
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

comp(28739..29953)
DNA (1215bp) protein (405aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2GFY6_9BACT
hypothetical protein; K07133 Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
hypothetical protein
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_261_28
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

30095..35437
DNA (5343bp) protein (1781aa)
Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_261_29
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

35443..36450
DNA (1008bp) protein (336aa)
galactose-1-phosphate uridylyltransferase (EC:2.7.7.12); K00965 UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
galactose-1-phosphate uridylyltransferase (EC:2.7.7.12); K00965 UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] id=14425851 bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
galactose-1-phosphate uridylyltransferase (EC:2.7.7.12)
RIFOXYB2_FULL_CP_37_13_rifoxyb2_full_scaffold_261_30
RIFOXYB2_FULL_WOR_1_37_13_curated, WOR-1, Bacteria

Not on your lists

36443..36958
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S3T3_THEOJ
hypothetical protein Tax=RIFOXYB2_FULL_WOR_1_37_13_curated
hypothetical protein
Displaying items 1-30 of 85 in total

View Taxonomy