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RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_351

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Displaying items 1-30 of 32 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_351_1
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

144..1862
DNA (1719bp) protein (573aa)
glutamine synthetase, type I (EC:6.3.1.2); K01915 glutamine synthetase [EC:6.3.1.2] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
glutamine synthetase (EC:6.3.1.2)
glutamine synthetase, type I (EC:6.3.1.2); K01915 glutamine synthetase [EC:6.3.1.2] id=5241579 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_351_2
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(2001..3332)
DNA (1332bp) protein (444aa)
glutamate dehydrogenase/leucine dehydrogenase (EC:1.4.1.4); K00262 glutamate dehydrogenase (NADP+) [EC:1.4.1.4] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
glutamate dehydrogenase/leucine dehydrogenase (EC:1.4.1.4)
glutamate dehydrogenase n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2FB38
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_351_3
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

3623..4600
DNA (978bp) protein (326aa)
hypothetical protein; K09720 hypothetical protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
deg:DehalGT_0805 protein of unknown function DUF128; K09720 hypothetical protein id=1242064 bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
hypothetical protein
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_351_4
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

4839..6164
DNA (1326bp) protein (442aa)
glutamine synthetase, type I; K01915 glutamine synthetase [EC:6.3.1.2] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Glutamine synthetase n=1 Tax=Methanobacterium sp. Maddingley MBC34 RepID=K6SWT6_9EURY
glnA2; glutamine synthetase GlnA2
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_351_5
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

6257..10669
DNA (4413bp) protein (1471aa)
glutamate synthase (NADH) large subunit (EC:1.4.1.14 1.4.1.13) Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
glutamate synthase (NADH) large subunit (EC:1.4.1.14 1.4.1.13)
Glutamate synthase (Ferredoxin) id=4123541 bin=GWF2_OP3_43_52 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_351_6
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

10662..12074
DNA (1413bp) protein (471aa)
glutamate synthase, NADH/NADPH, small subunit (EC:1.4.1.14) Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
glutamate synthase, NADH/NADPH, small subunit (EC:1.4.1.14)
Glutamate synthase, small subunit id=4123542 bin=GWF2_OP3_43_52 species=Clostridium ljungdahlii genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_351_7
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

12151..14646
DNA (2496bp) protein (832aa)
ATPase AAA; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
ATPase AAA-2 domain protein id=1982805 bin=GWE2_RBX1_39_32 species=Caldalkalibacillus thermarum genus=Caldalkalibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
ATPase AAA-2 domain-containing protein
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_351_8
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

14639..15997
DNA (1359bp) protein (453aa)
DNA repair protein RadA n=1 Tax=Oceanobacillus sp. Ndiop RepID=UPI00028836A8
DNA repair protein RadA Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
DNA repair protein RadA
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_351_9
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(16234..16695)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Leptonema illini DSM 21528 RepID=H2CCH2_9LEPT
Uncharacterized protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_351_10
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(16756..17040)
DNA (285bp) protein (95aa)
Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_351_11
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(17033..17593)
DNA (561bp) protein (187aa)
RNA polymerase sigma factor, sigma-70 family Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
RNA polymerase sigma factor id=1940644 bin=GWD2_RBX1-related_39_127 species=Tepidanaerobacter acetatoxydans genus=Tepidanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
RNA polymerase sigma factor, sigma-70 family
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_351_12
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(17636..18889)
DNA (1254bp) protein (418aa)
3-isopropylmalate dehydratase (EC:4.2.1.33); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
3-isopropylmalate dehydratase (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0AZY9_SYNWW
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_351_13
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(18889..19812)
DNA (924bp) protein (308aa)
Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_351_14
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

19931..20713
DNA (783bp) protein (261aa)
ribonuclease III (EC:3.1.26.3); K03685 ribonuclease III [EC:3.1.26.3] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Ribonuclease III (EC:3.1.26.3)
Ribonuclease III n=1 Tax=Spirochaeta sp. L21-RPul-D2 RepID=V5WH34_9SPIO
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_351_15
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

20713..22005
DNA (1293bp) protein (431aa)
dihydroorotase, multifunctional complex type; K01465 dihydroorotase [EC:3.5.2.3] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Dihydroorotase id=2270648 bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
dihydroorotase, multifunctional complex type
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_351_16
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

21986..22690
DNA (705bp) protein (235aa)
hypothetical protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
hypothetical protein id=24458788 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_351_17
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

22692..23042
DNA (351bp) protein (117aa)
Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_351_18
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

23213..23617
DNA (405bp) protein (135aa)
Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_351_19
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

23614..24783
DNA (1170bp) protein (390aa)
Type II and III secretion system protein n=1 Tax=Dialister micraerophilus DSM 19965 RepID=F2BXV8_9FIRM
type II and III secretion system protein; K02666 type IV pilus assembly protein PilQ Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
type II and III secretion system protein
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_351_20
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(24799..25869)
DNA (1071bp) protein (357aa)
glutamate 5-kinase (EC:2.7.2.11); K00931 glutamate 5-kinase [EC:2.7.2.11] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
glutamate 5-kinase (EC:2.7.2.11)
Glutamate 5-kinase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNY5_9FIRM
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_351_21
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists


comp(25893..26138)
DNA (246bp) protein (82aa)
50S ribosomal protein L27 n=1 Tax=Oceanicaulis alexandrii RepID=UPI0003B3FD6E
50S ribosomal protein L27; K02899 large subunit ribosomal protein L27 Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
rpmA; 50S ribosomal subunit protein L27
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_351_22
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists


comp(26128..26439)
DNA (312bp) protein (104aa)
50S ribosomal protein L21 n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=M4Y4U0_CLOSH
ribosomal protein L21P Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
ribosomal protein L21P
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_351_23
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(26450..26749)
DNA (300bp) protein (100aa)
Putative uncharacterized protein n=1 Tax=Thermoanaerobacter wiegelii Rt8.B1 RepID=G2MR15_9THEO
hypothetical protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
hypothetical protein
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_351_24
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(26736..28421)
DNA (1686bp) protein (562aa)
Radical SAM domain protein n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S289_THEOJ
radical SAM protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
radical SAM protein
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_351_25
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(28514..29443)
DNA (930bp) protein (310aa)
antirepressor n=1 Tax=Omnitrophica bacterium SCGC AAA252-B19 RepID=UPI0003817E4B
filamentation induced by cAMP protein fic Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
filamentation induced by cAMP protein fic
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_351_26
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists


comp(29499..31871)
DNA (2373bp) protein (791aa)
leucyl-tRNA synthetase; K01869 leucyl-tRNA synthetase [EC:6.1.1.4] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
leucyl-tRNA synthetase (EC:6.1.1.4)
Leucine--tRNA ligase n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S2B1_THEOJ
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_351_27
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(31943..34795)
DNA (2853bp) protein (951aa)
ATPase AAA-2 domain protein n=1 Tax=Caldalkalibacillus thermarum TA2.A1 RepID=F5L596_9BACI
ATPase AAA-2 domain-containing protein; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
ATPase AAA-2 domain-containing protein
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_351_28
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

35085..36272
DNA (1188bp) protein (396aa)
trpB; tryptophan synthase subunit beta TrpB (EC:4.2.1.20) Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
trpB; tryptophan synthase subunit beta TrpB (EC:4.2.1.20)
Tryptophan synthase beta chain n=1 Tax=planctomycete KSU-1 RepID=I3IPV1_9PLAN
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_351_29
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(36393..37283)
DNA (891bp) protein (297aa)
Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_351_30
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

37380..38141
DNA (762bp) protein (254aa)
tryptophan synthase subunit alpha (EC:4.2.1.20); K01695 tryptophan synthase alpha chain [EC:4.2.1.20] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
tryptophan synthase subunit alpha (EC:4.2.1.20)
Tryptophan synthase alpha chain id=4112633 bin=GWC2_Deltaproteobacteria_56_8 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
Displaying items 1-30 of 32 in total

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