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RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_588

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_588_1
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

77..1135
DNA (1059bp) protein (353aa)
glycine cleavage system protein T (EC:2.1.2.10); K00605 aminomethyltransferase [EC:2.1.2.10] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
glycine cleavage system protein T (EC:2.1.2.10)
Aminomethyltransferase id=2161536 bin=GWE2_RBX1_39_32 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_588_2
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

1200..1472
DNA (273bp) protein (91aa)
Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_588_3
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

1469..1861
DNA (393bp) protein (131aa)
Glycine cleavage system H protein n=1 Tax=Staphylococcus pettenkoferi VCU012 RepID=H0DIE9_9STAP
glycine cleavage system protein H; K02437 glycine cleavage system H protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
glycine cleavage system protein H
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_588_4
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

1866..3146
DNA (1281bp) protein (427aa)
glycine dehydrogenase subunit 1 (EC:1.4.4.2); K00282 glycine dehydrogenase subunit 1 [EC:1.4.4.2] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
glycine dehydrogenase subunit 1 (EC:1.4.4.2)
hypothetical protein n=1 Tax=Zymophilus raffinosivorans RepID=UPI00037DD88B
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_588_5
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(3123..3635)
DNA (513bp) protein (171aa)
Lipoprotein LpqB, GerMN domain-containing protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Putative uncharacterized protein id=2847533 bin=GWC1_Spirochaetes_27_15 species=Treponema denticola genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC1_Spirochaetes_27_15 organism_group=Spirochaetes
sporulation/spore germination protein
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_588_6
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists


comp(3684..6272)
DNA (2589bp) protein (863aa)
gyrA; DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3A8P8_CARHZ
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_588_7
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(6340..8313)
DNA (1974bp) protein (658aa)
DNA topoisomerase IV subunit B (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
DNA topoisomerase IV subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Thermincola potens (strain JR) RepID=D5X8C5_THEPJ
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_588_8
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(8331..8609)
DNA (279bp) protein (93aa)
Putative uncharacterized protein n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YIN7_9DELT
putative RNA-binding protein containing Zn ribbon Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
putative RNA-binding protein containing Zn ribbon
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_588_9
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(8609..9751)
DNA (1143bp) protein (381aa)
DNA polymerase III subunit beta; K02338 DNA polymerase III subunit beta [EC:2.7.7.7] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
DNA polymerase III subunit beta id=1993427 bin=GWE2_RBX1_39_32 species=Halobacteroides halobius genus=Halobacteroides taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
DNA polymerase III subunit beta
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_588_10
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(9951..11312)
DNA (1362bp) protein (454aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Thermincola potens (strain JR) RepID=D5X8B8_THEPJ
chromosomal replication initiator protein DnaA; K02313 chromosomal replication initiator protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
chromosomal replication initiator protein DnaA
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_588_11
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

11722..12060
DNA (339bp) protein (113aa)
Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_588_12
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

12368..13039
DNA (672bp) protein (224aa)
hypothetical protein; K03217 preprotein translocase subunit YidC Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Membrane protein insertase YidC id=4180430 bin=GWF2_OP9_related_35_9 species=Nautilia profundicola genus=Nautilia taxon_order=Nautiliales taxon_class=Epsilonproteobacteria phylum=Proteobacteria tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
membrane protein insertase, YidC/Oxa1 family
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_588_13
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

13055..13672
DNA (618bp) protein (206aa)
Jag protein n=1 Tax=Clostridium botulinum BKT015925 RepID=F4A6N3_CLOBO
jag protein; K06346 spoIIIJ-associated protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
jag protein
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_588_14
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

13742..15115
DNA (1374bp) protein (458aa)
tRNA modification GTPase TrmE; K03650 tRNA modification GTPase [EC:3.6.-.-] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
tRNA modification GTPase MnmE n=1 Tax=Streptococcus macacae NCTC 11558 RepID=G5JUK4_9STRE
tRNA modification GTPase
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_588_15
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(15670..16716)
DNA (1047bp) protein (349aa)
putative membrane-associated zinc metalloprotease; K11749 regulator of sigma E protease [EC:3.4.24.-] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
UPI00020A9D26 related cluster id=3984811 bin=GWF2_OP9-related_38_17 species=Thermodesulfobium narugense genus=Thermodesulfobium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
putative membrane-associated zinc metalloprotease
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_588_16
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(16707..17630)
DNA (924bp) protein (308aa)
NADH-Dependent dehydrogenase family n=2 Tax=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) RepID=B1XP03_SYNP2
NADH-dependent dehydrogenase family protein; K03810 virulence factor Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
NADH-dependent dehydrogenase family protein
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_588_17
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(17627..18730)
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EEJ8_9BACT
pleiotropic regulatory protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
pleiotropic regulatory protein
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_588_18
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

18782..19744
DNA (963bp) protein (321aa)
isopropylmalate/homocitrate/citramalate synthase; K01666 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
hypothetical protein n=1 Tax=Omnitrophica bacterium SCGC AAA252-B19 RepID=UPI00035F44B1
isopropylmalate/homocitrate/citramalate synthase
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_588_19
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(19779..20891)
DNA (1113bp) protein (371aa)
lpxB; lipid-A-disaccharide synthase (EC:2.4.1.182); K00748 lipid-A-disaccharide synthase [EC:2.4.1.182] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Lipid-A-disaccharide synthase (EC:2.4.1.182)
Lipid-A-disaccharide synthase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HU37_9FIRM
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_588_20
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(20891..22171)
DNA (1281bp) protein (427aa)
acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase (EC:2.3.1.129); K00677 UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase (EC:2.3.1.129)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase id=2187898 bin=GWE2_RBX1_39_32 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_588_21
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(22164..23006)
DNA (843bp) protein (281aa)
lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; K02535 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase n=1 Tax=Leptospira interrogans str. FPW1039 RepID=M5Y6P8_LEPIR
lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_588_22
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(23011..24372)
DNA (1362bp) protein (454aa)
VanW family protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
VanW family protein id=2104666 bin=GWE2_Clostridiales_32_10 species=Caldicellulosiruptor saccharolyticus genus=Caldicellulosiruptor taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_Clostridiales_32_10 organism_group=Clostridiales
VanW family protein
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_588_23
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(24445..25632)
DNA (1188bp) protein (396aa)
translation elongation factor Tu (EC:2.7.7.4); K02358 elongation factor Tu Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
translation elongation factor Tu (EC:2.7.7.4)
Elongation factor Tu n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WRR8_KYRT2
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_588_24
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(25831..26343)
DNA (513bp) protein (171aa)
Orotate phosphoribosyltransferase n=1 Tax=Rhodopirellula europaea SH398 RepID=M5RVV5_9PLAN
orotate phosphoribosyltransferase Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
orotate phosphoribosyltransferase
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_588_25
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(26477..26800)
DNA (324bp) protein (108aa)
Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
RIFOXYB2_FULL_CP_42_35_rifoxyb2_full_scaffold_588_26
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(27071..27883)
DNA (813bp) protein (271aa)
Transposase IS116/IS110/IS902 family protein n=1 Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KMT2_ARCVS
transposase IS116/IS110/IS902 family protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
transposase IS116/IS110/IS902 family protein
Displaying 26 items

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