ggKbase home page

rifoxyb2_full_scaffold_6343_curated

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifoxyb2_full_scaffold_6343_curated_1
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..398)
DNA (396bp) protein (132aa)
PTS system mannose/fructose/sorbose family transporter subunit IIC id=2013389 bin=GWB2_Deltaproteobacteria_65_81 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
PTS family phosphotransferase mannose-specific enzyme IIC; K02795 PTS system, mannose-specific IIC component
Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
rifoxyb2_full_scaffold_6343_curated_2
RIFOXYD2_FULL_Deltaproteobacteria_66_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(401..877)
DNA (477bp) protein (159aa)
PTS system sorbose subfamily transporter subunit IIB; K02793 PTS system, mannose-specific IIA component [EC:2.7.1.69]; K02794 PTS system, mannose-specific IIB component [EC:2.7.1.69]
PTS system sorbose subfamily IIB component id=4963301 bin=GWA2_Deltaproteo_65_63 species=Desulfomicrobium baculatum genus=Desulfomicrobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
Tax=RIFOXYD2_FULL_Deltaproteobacteria_66_9_curated
rifoxyb2_full_scaffold_6343_curated_3
RIFOXYD2_FULL_Deltaproteobacteria_66_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(882..1304)
DNA (423bp) protein (141aa)
PTS system fructose subfamily transporter subunit IIA; K02793 PTS system, mannose-specific IIA component [EC:2.7.1.69]
PTS system fructose subfamily IIA component id=4963302 bin=GWA2_Deltaproteo_65_63 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
Tax=RIFOXYD2_FULL_Deltaproteobacteria_66_9_curated
rifoxyb2_full_scaffold_6343_curated_4
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1301..2209)
DNA (909bp) protein (303aa)
UPF0042 nucleotide-binding protein Gmet_1286 id=4963303 bin=GWA2_Deltaproteo_65_63 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria rbh
hypothetical protein; K06958 UPF0042 nucleotide-binding protein
Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
rifoxyb2_full_scaffold_6343_curated_5
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2206..3144)
DNA (939bp) protein (313aa)
hprK; hpr(ser) kinase/phosphatase; K06023 HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
HPr kinase/phosphorylase id=2013380 bin=GWB2_Deltaproteobacteria_65_81 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good + rbh
Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
rifoxyb2_full_scaffold_6343_curated_6
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3162..3623)
DNA (462bp) protein (154aa)
PTS system transporter subunit IIA; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69]
PTS system transporter subunit IIA id=3110571 bin=GWC2_Deltaproteobacteria_66_88 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
rifoxyb2_full_scaffold_6343_curated_7
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3620..4159)
DNA (540bp) protein (180aa)
Ribosomal subunit interface-associated sigma-54 modulation protein RaiA id=2013376 bin=GWB2_Deltaproteobacteria_65_81 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good + rbh
sigma 54 modulation protein/ribosomal protein S30EA; K05808 putative sigma-54 modulation protein
Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
rifoxyb2_full_scaffold_6343_curated_8
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4201..4791)
DNA (591bp) protein (197aa)
RNA polymerase sigma-54 factor id=4963307 bin=GWA2_Deltaproteo_65_63 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria rbh
RNA polymerase sigma 54 subunit RpoN; K03092 RNA polymerase sigma-54 factor
Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
rifoxyb2_full_scaffold_6343_curated_9
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5102..5203
DNA (102bp) protein (34aa)
Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
Displaying 9 items

View Taxonomy