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RIFOXYC1_FULL_CP_56_13_rifoxyc1_full_scaffold_225

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Displaying items 1-30 of 38 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYC1_FULL_CP_56_13_rifoxyc1_full_scaffold_225_1
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

2..124
DNA (123bp) protein (41aa)
Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
RIFOXYC1_FULL_CP_56_13_rifoxyc1_full_scaffold_225_2
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

comp(79..384)
DNA (306bp) protein (102aa)
Putative uncharacterized protein n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YIC6_9DELT
Putative uncharacterized protein Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
RIFOXYC1_FULL_CP_56_13_rifoxyc1_full_scaffold_225_3
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

comp(494..1018)
DNA (525bp) protein (175aa)
adenine phosphoribosyltransferase (EC:2.4.2.7) Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
adenine phosphoribosyltransferase (EC:2.4.2.7)
adenine phosphoribosyltransferase id=7200792 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
RIFOXYC1_FULL_CP_56_13_rifoxyc1_full_scaffold_225_4
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

comp(1031..1438)
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Geopsychrobacter electrodiphilus RepID=UPI00036DABF1
tatA; twin arginine translocase protein A; K03116 sec-independent protein translocase protein TatA Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
tatA; twin arginine translocase protein A
RIFOXYC1_FULL_CP_56_13_rifoxyc1_full_scaffold_225_5
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

comp(1448..1987)
DNA (540bp) protein (180aa)
thioredoxin family protein Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
hypothetical protein
resA; thiol-disulfide oxidoreductase resA id=14626589 bin=bin7_NC10_sister species=Nitrospina sp. SCGC AAA288-L16 genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=bin7_NC10_sister organism_group=NC10
RIFOXYC1_FULL_CP_56_13_rifoxyc1_full_scaffold_225_6
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

comp(1984..2466)
DNA (483bp) protein (161aa)
CheW protein n=1 Tax=Desulfovibrio fructosivorans JJ RepID=E1JRI8_DESFR
CheW protein; K03408 purine-binding chemotaxis protein CheW Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
CheW protein
RIFOXYC1_FULL_CP_56_13_rifoxyc1_full_scaffold_225_7
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

comp(2498..3586)
DNA (1089bp) protein (363aa)
pyrD; dihydroorotate dehydrogenase (EC:1.3.3.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
pyrD; dihydroorotate dehydrogenase (EC:1.3.3.1)
dihydroorotate dehydrogenase n=1 Tax=Laceyella sacchari RepID=UPI0003B6C77C
RIFOXYC1_FULL_CP_56_13_rifoxyc1_full_scaffold_225_8
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

comp(3614..4441)
DNA (828bp) protein (276aa)
radical SAM domain-containing protein Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
radical SAM domain-containing protein id=14429671 bin=bin3_NC10 species=Pirellula staleyi genus=Pirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin3_NC10 organism_group=NC10
radical SAM domain-containing protein
RIFOXYC1_FULL_CP_56_13_rifoxyc1_full_scaffold_225_9
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

comp(4492..6057)
DNA (1566bp) protein (522aa)
Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
RIFOXYC1_FULL_CP_56_13_rifoxyc1_full_scaffold_225_10
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

6251..8290
DNA (2040bp) protein (680aa)
DNA ligase, NAD-dependent (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2] Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
DNA ligase, NAD-dependent (EC:6.5.1.2)
DNA ligase n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XPH6_9BACT
RIFOXYC1_FULL_CP_56_13_rifoxyc1_full_scaffold_225_11
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

8287..9690
DNA (1404bp) protein (468aa)
Trk system potassium uptake protein TrkA n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LM45_THEPS
trkA; Trk system potassium uptake protein TrkA Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
trkA; Trk system potassium uptake protein TrkA
RIFOXYC1_FULL_CP_56_13_rifoxyc1_full_scaffold_225_12
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

9748..10887
DNA (1140bp) protein (380aa)
PF01594 domain protein n=1 Tax=Bacteriovorax sp. BAL6_X RepID=T0BYQ3_9DELT
hypothetical protein Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
hypothetical protein
RIFOXYC1_FULL_CP_56_13_rifoxyc1_full_scaffold_225_13
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

10884..14873
DNA (3990bp) protein (1330aa)
Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
RIFOXYC1_FULL_CP_56_13_rifoxyc1_full_scaffold_225_14
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

comp(14929..15462)
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Oscillatoria sp. PCC 10802 RepID=UPI00036AA056
pentapeptide repeat-containing protein Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
pentapeptide repeat-containing protein
RIFOXYC1_FULL_CP_56_13_rifoxyc1_full_scaffold_225_15
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

16139..17410
DNA (1272bp) protein (424aa)
hypothetical protein Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
Putative uncharacterized protein id=4876701 bin=GWA2_OP3_52_12 species=Pelodictyon luteolum genus=Pelodictyon taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
hypothetical protein
RIFOXYC1_FULL_CP_56_13_rifoxyc1_full_scaffold_225_16
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

17508..18500
DNA (993bp) protein (331aa)
FTCD, LCHC1; formiminotransferase cyclodeaminase (EC:2.1.2.5 4.3.1.4); K13990 glutamate formiminotransferase / formiminotetrahydrofolate cyclodeaminase [EC:2.1.2.5 4.3.1.4] Tax=RIFOXYD1_FULL_Proteobac
ftcD1; protein FtcD1 (EC:2.1.2.5 4.3.1.4)
PREDICTED: formimidoyltransferase-cyclodeaminase-like, partial n=1 Tax=Pseudopodoces humilis RepID=UPI0003956FEC
RIFOXYC1_FULL_CP_56_13_rifoxyc1_full_scaffold_225_17
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

18460..20460
DNA (2001bp) protein (667aa)
4-alpha-glucanotransferase (EC:2.4.1.25); K00705 4-alpha-glucanotransferase [EC:2.4.1.25] Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
4-alpha-glucanotransferase (EC:2.4.1.25)
RIFOXYC1_FULL_CP_56_13_rifoxyc1_full_scaffold_225_18
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

comp(20457..23555)
DNA (3099bp) protein (1033aa)
Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
RIFOXYC1_FULL_CP_56_13_rifoxyc1_full_scaffold_225_19
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

23733..24434
DNA (702bp) protein (234aa)
metalloendopeptidase-like membrane protein Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
Peptidase M23B id=3661122 bin=GWC2_Proteo_65_14_Ab886 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
Peptidase M23
RIFOXYC1_FULL_CP_56_13_rifoxyc1_full_scaffold_225_20
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

comp(24457..26043)
DNA (1587bp) protein (529aa)
serine/threonine protein kinase n=1 Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI000262771E
hypothetical protein Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
hypothetical protein
RIFOXYC1_FULL_CP_56_13_rifoxyc1_full_scaffold_225_21
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

26159..26863
DNA (705bp) protein (235aa)
hypothetical protein; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
ial:IALB_3166 Putative methyltransferase; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] id=718194 bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
hypothetical protein
RIFOXYC1_FULL_CP_56_13_rifoxyc1_full_scaffold_225_22
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

comp(26873..27598)
DNA (726bp) protein (242aa)
Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
RIFOXYC1_FULL_CP_56_13_rifoxyc1_full_scaffold_225_23
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

comp(27595..28164)
DNA (570bp) protein (190aa)
hypothetical protein; K08316 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
Putative uncharacterized protein n=1 Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) RepID=E0TGJ5_PARBH
hypothetical protein
RIFOXYC1_FULL_CP_56_13_rifoxyc1_full_scaffold_225_24
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

comp(28161..29582)
DNA (1422bp) protein (474aa)
rfaE bifunctional protein; K03272 D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
rfaE bifunctional protein n=1 Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI00026291EA
rfaE bifunctional protein
RIFOXYC1_FULL_CP_56_13_rifoxyc1_full_scaffold_225_25
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

29709..30293
DNA (585bp) protein (195aa)
Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
RIFOXYC1_FULL_CP_56_13_rifoxyc1_full_scaffold_225_26
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

comp(30324..31313)
DNA (990bp) protein (330aa)
Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
RIFOXYC1_FULL_CP_56_13_rifoxyc1_full_scaffold_225_27
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

31495..32709
DNA (1215bp) protein (405aa)
hypothetical protein n=1 Tax=Methylomonas sp. MK1 RepID=UPI00036AC2F4
Ni,Fe-hydrogenase I large subunit Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
Ni,Fe-hydrogenase I large subunit
RIFOXYC1_FULL_CP_56_13_rifoxyc1_full_scaffold_225_28
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

32709..33404
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI00036555BA
hydrogenase nickel incorporation protein HypB Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
GTP hydrolase
RIFOXYC1_FULL_CP_56_13_rifoxyc1_full_scaffold_225_29
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

33404..34108
DNA (705bp) protein (235aa)
hypothetical protein; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7] Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
Exonuclease n=1 Tax=Bacteriovorax sp. DB6_IX RepID=T0RQQ5_9DELT
hypothetical protein
RIFOXYC1_FULL_CP_56_13_rifoxyc1_full_scaffold_225_30
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

34169..34840
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C0A5_NITHN
hypothetical protein Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
hypothetical protein
Displaying items 1-30 of 38 in total

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