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RIFOXYC2_FULL_CP_41_25_rifoxyc2_full_scaffold_299

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Displaying items 1-30 of 46 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYC2_FULL_CP_41_25_rifoxyc2_full_scaffold_299_1
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(27..701)
DNA (675bp) protein (225aa)
Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
RIFOXYC2_FULL_CP_41_25_rifoxyc2_full_scaffold_299_2
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

795..1073
DNA (279bp) protein (93aa)
gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C; K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] id=1250097 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit
RIFOXYC2_FULL_CP_41_25_rifoxyc2_full_scaffold_299_3
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

1070..2521
DNA (1452bp) protein (484aa)
glutamyl-tRNA(Gln) amidotransferase subunit A (EC:3.5.1.4); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
glutamyl-tRNA(Gln) amidotransferase subunit A (EC:3.5.1.4)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Thermincola potens (strain JR) RepID=D5XD90_THEPJ
RIFOXYC2_FULL_CP_41_25_rifoxyc2_full_scaffold_299_4
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

2532..3212
DNA (681bp) protein (227aa)
Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
RIFOXYC2_FULL_CP_41_25_rifoxyc2_full_scaffold_299_5
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

3341..3808
DNA (468bp) protein (156aa)
hypothetical protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Putative uncharacterized protein id=4671445 bin=GWF2_Planctomycetes_42_9 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
hypothetical protein
RIFOXYC2_FULL_CP_41_25_rifoxyc2_full_scaffold_299_6
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(3945..4091)
DNA (147bp) protein (49aa)
Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
RIFOXYC2_FULL_CP_41_25_rifoxyc2_full_scaffold_299_7
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

4103..5545
DNA (1443bp) protein (481aa)
glutamyl-tRNA(Gln) amidotransferase subunit B; K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B id=1703035 bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
glutamyl-tRNA(Gln) amidotransferase subunit B
RIFOXYC2_FULL_CP_41_25_rifoxyc2_full_scaffold_299_8
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(5542..6477)
DNA (936bp) protein (312aa)
transposase IS4 family protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Transposase id=2010358 bin=GWD2_Nitrospirae-related_57_8 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
transposase IS4 family protein
RIFOXYC2_FULL_CP_41_25_rifoxyc2_full_scaffold_299_9
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(6714..8243)
DNA (1530bp) protein (510aa)
Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
RIFOXYC2_FULL_CP_41_25_rifoxyc2_full_scaffold_299_10
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(8240..9526)
DNA (1287bp) protein (429aa)
Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
RIFOXYC2_FULL_CP_41_25_rifoxyc2_full_scaffold_299_11
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

9608..10213
DNA (606bp) protein (202aa)
nicotinate/nicotinamide nucleotide adenylyltransferase (EC:2.7.7.18); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
nadD; nicotinate-nucleotide adenylyltransferase NadD (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LV10_CLOCD
RIFOXYC2_FULL_CP_41_25_rifoxyc2_full_scaffold_299_12
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

10210..11469
DNA (1260bp) protein (420aa)
Putative Zn-dependent peptidase n=1 Tax=Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628) RepID=G7WC45_DESOD
putative Zn-dependent peptidase Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Zn-dependent peptidase
RIFOXYC2_FULL_CP_41_25_rifoxyc2_full_scaffold_299_13
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

11531..12679
DNA (1149bp) protein (383aa)
putative ATPase Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Putative uncharacterized protein id=5026626 bin=GWA2__Bacteriovorax-rel_49_15 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2__Bacteriovorax-rel_49_15 organism_group=Deltaproteobacteria
putative ATPase
RIFOXYC2_FULL_CP_41_25_rifoxyc2_full_scaffold_299_14
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

12694..13218
DNA (525bp) protein (175aa)
deoxyuridine 5'-triphosphate nucleotidohydrolase Dut (EC:3.6.1.23); K01520 dUTP pyrophosphatase [EC:3.6.1.23] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
deoxyuridine 5'-triphosphate nucleotidohydrolase Dut (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase id=3674208 bin=GWC2_Nitrospirae-rel_56_14 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
RIFOXYC2_FULL_CP_41_25_rifoxyc2_full_scaffold_299_15
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

13233..13970
DNA (738bp) protein (246aa)
dihydrodipicolinate reductase (EC:1.3.1.26); K00215 dihydrodipicolinate reductase [EC:1.3.1.26] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
dihydrodipicolinate reductase (EC:1.3.1.26)
Dihydrodipicolinate reductase id=3947451 bin=GWF2_OP9_related_35_9 species=Lentisphaera araneosa genus=Lentisphaera taxon_order=Lentisphaerales taxon_class=Lentisphaeria phylum=Lentisphaerae tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
RIFOXYC2_FULL_CP_41_25_rifoxyc2_full_scaffold_299_16
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

13972..14439
DNA (468bp) protein (156aa)
SsrA-binding protein n=1 Tax=Bacillus coagulans (strain 2-6) RepID=F7Z5V5_BACC6
smpB; SsrA-binding protein; K03664 SsrA-binding protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
smpB; SsrA-binding protein
RIFOXYC2_FULL_CP_41_25_rifoxyc2_full_scaffold_299_17
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

14429..14608
DNA (180bp) protein (60aa)
Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
RIFOXYC2_FULL_CP_41_25_rifoxyc2_full_scaffold_299_18
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

14605..15087
DNA (483bp) protein (161aa)
Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
RIFOXYC2_FULL_CP_41_25_rifoxyc2_full_scaffold_299_19
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(15807..16634)
DNA (828bp) protein (276aa)
prophage antirepressor Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Prophage antirepressor id=3424160 bin=GWC2_Planctomycetes_45_44 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
prophage antirepressor
RIFOXYC2_FULL_CP_41_25_rifoxyc2_full_scaffold_299_20
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(16657..16803)
DNA (147bp) protein (49aa)
Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
RIFOXYC2_FULL_CP_41_25_rifoxyc2_full_scaffold_299_21
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(16815..17207)
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Rudanella lutea RepID=UPI0003821B1C
helicase domain-containing protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
helicase domain-containing protein
RIFOXYC2_FULL_CP_41_25_rifoxyc2_full_scaffold_299_22
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(17257..18045)
DNA (789bp) protein (263aa)
Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
RIFOXYC2_FULL_CP_41_25_rifoxyc2_full_scaffold_299_23
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(18264..19352)
DNA (1089bp) protein (363aa)
GTP-binding protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Uncharacterized protein id=4561453 bin=GWC2_Pelobacter_58_13 species=unknown genus=Pseudogulbenkiania taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
RIFOXYC2_FULL_CP_41_25_rifoxyc2_full_scaffold_299_24
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

19426..19902
DNA (477bp) protein (159aa)
response regulator Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Response regulator receiver id=4022108 bin=GWF2_OP9_related_35_9 species=Gloeocapsa sp. PCC 73106 genus=Gloeocapsa taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
response regulator
RIFOXYC2_FULL_CP_41_25_rifoxyc2_full_scaffold_299_25
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(19907..21961)
DNA (2055bp) protein (685aa)
HAMP domain-containing sensor histidine kinase Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Integral membrane sensor signal transduction histidine kinase id=4642867 bin=GWC2_OP3-like_45_7 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
sensor histidine kinase, HAMP domain-containing
RIFOXYC2_FULL_CP_41_25_rifoxyc2_full_scaffold_299_26
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(21999..23612)
DNA (1614bp) protein (538aa)
UPI00039EF553 related cluster n=1 Tax=unknown RepID=UPI00039EF553
hypothetical protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
hypothetical protein
RIFOXYC2_FULL_CP_41_25_rifoxyc2_full_scaffold_299_27
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(23723..26146)
DNA (2424bp) protein (808aa)
Spermidine/putrescine transport system ATP-binding protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P6D8_AZOS1
potA; spermidine/putrescine transport system ATP-binding protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
potA; spermidine/putrescine transport system ATP-binding protein
RIFOXYC2_FULL_CP_41_25_rifoxyc2_full_scaffold_299_28
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(26143..28149)
DNA (2007bp) protein (669aa)
ABC transporter n=1 Tax=Bartonella rattaustraliani RepID=UPI0002D7C23C
ABC transporter-like protein; K02003 putative ABC transport system ATP-binding protein Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
ABC transporter-like protein
RIFOXYC2_FULL_CP_41_25_rifoxyc2_full_scaffold_299_29
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(28156..28923)
DNA (768bp) protein (256aa)
Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
RIFOXYC2_FULL_CP_41_25_rifoxyc2_full_scaffold_299_30
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(28925..30265)
DNA (1341bp) protein (447aa)
Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
Displaying items 1-30 of 46 in total

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