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RIFOXYC2_FULL_CP_46_14_rifoxyc2_full_scaffold_137

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Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYC2_FULL_CP_46_14_rifoxyc2_full_scaffold_137_1
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

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2..337
DNA (336bp) protein (112aa)
type I site-specific deoxyribonuclease, HsdR family; K01153 type I restriction enzyme, R subunit [EC:3.1.21.3] Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
HsdR family type I site-specific deoxyribonuclease; K01153 type I restriction enzyme, R subunit [EC:3.1.21.3] id=5802441 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
HsdR family type I site-specific deoxyribonuclease
RIFOXYC2_FULL_CP_46_14_rifoxyc2_full_scaffold_137_2
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

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386..736
DNA (351bp) protein (117aa)
multi-sensor signal transduction histidine kinase Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
Two-component response regulator id=2314960 bin=GWA2_Elusimicrobia_56_46 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Elusimicrobia_56_46 organism_group=Elusimicrobia organism_desc=Good
multi-sensor signal transduction histidine kinase
RIFOXYC2_FULL_CP_46_14_rifoxyc2_full_scaffold_137_3
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

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840..1592
DNA (753bp) protein (251aa)
Carbohydrate kinase, YjeF related protein n=7 Tax=Clostridium thermocellum RepID=A3DIW6_CLOTH
carbohydrate kinase, YjeF-like protein Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
carbohydrate kinase, YjeF-like protein
RIFOXYC2_FULL_CP_46_14_rifoxyc2_full_scaffold_137_4
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

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1577..2341
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRF2_9FIRM
hypothetical protein Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
protein of unknown function DUF140
RIFOXYC2_FULL_CP_46_14_rifoxyc2_full_scaffold_137_5
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

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2338..3042
DNA (705bp) protein (235aa)
Fe(3+)-transporting ATPase (EC:3.6.3.30)
ABC-type transport system involved in resistance to organic solvents, ATPase component Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
ABC transporter related protein id=4066527 bin=GWF2_OP9-related_38_17 species=Pelosinus fermentans genus=Pelosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
RIFOXYC2_FULL_CP_46_14_rifoxyc2_full_scaffold_137_6
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

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3043..4158
DNA (1116bp) protein (372aa)
hypothetical protein; K02067 putative ABC transport system substrate-binding protein Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
Mammalian cell entry related domain protein id=3947443 bin=GWF2_OP9_related_35_9 species=Pelosinus fermentans genus=Pelosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
hypothetical protein
RIFOXYC2_FULL_CP_46_14_rifoxyc2_full_scaffold_137_7
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

Not on your lists

comp(4342..5559)
DNA (1218bp) protein (406aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EEC7_9BACT
peptidase, M16 family Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
peptidase, M16 family
RIFOXYC2_FULL_CP_46_14_rifoxyc2_full_scaffold_137_8
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

Not on your lists

comp(5549..6796)
DNA (1248bp) protein (416aa)
Zinc protease n=1 Tax=Clostridium sp. CAG:715 RepID=R5DXX9_9CLOT
Zn-dependent peptidase Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
Zn-dependent peptidase
RIFOXYC2_FULL_CP_46_14_rifoxyc2_full_scaffold_137_9
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

Not on your lists

comp(6789..7439)
DNA (651bp) protein (217aa)
phosphoribosylformylglycinamidine synthase 1 (EC:6.3.5.3); K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
phosphoribosylformylglycinamidine synthase 1 (EC:6.3.5.3)
phosphoribosylformylglycinamidine synthase n=1 Tax=Sporolactobacillus vineae RepID=UPI000288CE82
RIFOXYC2_FULL_CP_46_14_rifoxyc2_full_scaffold_137_10
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

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comp(7436..7678)
DNA (243bp) protein (81aa)
purS; phosphoribosylformylglycinamidine synthase subunit PurS (EC:6.3.5.3); K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
purS; phosphoribosylformylglycinamidine synthase subunit PurS (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase subunit PurS n=1 Tax=Halobacillus halophilus (strain ATCC 35676 / DSM 2266 / JCM 20832 / NBRC 102448/ NCIMB 2269) RepID=I0JIJ3_HALH3
RIFOXYC2_FULL_CP_46_14_rifoxyc2_full_scaffold_137_11
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

Not on your lists

comp(7680..8972)
DNA (1293bp) protein (431aa)
adenylosuccinate lyase (EC:4.3.2.2); K01756 adenylosuccinate lyase [EC:4.3.2.2] Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
deb:DehaBAV1_0759 adenylosuccinate lyase (EC:4.3.2.2); K01756 adenylosuccinate lyase [EC:4.3.2.2] id=1242492 bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
adenylosuccinate lyase (EC:4.3.2.2)
RIFOXYC2_FULL_CP_46_14_rifoxyc2_full_scaffold_137_12
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

Not on your lists

comp(9034..10089)
DNA (1056bp) protein (352aa)
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1] Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=6 Tax=Thermoanaerobacter RepID=B0K1E3_THEPX
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
RIFOXYC2_FULL_CP_46_14_rifoxyc2_full_scaffold_137_13
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

Not on your lists

10165..10353
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=planctomycete KSU-1 RepID=I3IKA1_9PLAN
hypothetical protein Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
hypothetical protein
RIFOXYC2_FULL_CP_46_14_rifoxyc2_full_scaffold_137_14
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

Not on your lists

10338..10640
DNA (303bp) protein (101aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1JB23_9ARCH
plasmid stabilization system Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
plasmid stabilization system
RIFOXYC2_FULL_CP_46_14_rifoxyc2_full_scaffold_137_15
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

Not on your lists

comp(10635..11525)
DNA (891bp) protein (297aa)
purC; phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6); K01923 phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
purC; phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YJX6_9DELT
RIFOXYC2_FULL_CP_46_14_rifoxyc2_full_scaffold_137_16
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

Not on your lists

comp(11501..12199)
DNA (699bp) protein (233aa)
WecB/TagA/CpsF family glycosyl transferase (EC:2.4.1.187); K05946 N-acetylglucosaminyldiphosphoundecaprenol [EC:2.4.1.187] Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
Exopolysaccharide biosynthesis protein, WecB/TagA/CpsF family n=1 Tax=Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1) RepID=L0KC18_HALHC
exopolysaccharide biosynthesis protein, WecB/TagA/CpsF family
RIFOXYC2_FULL_CP_46_14_rifoxyc2_full_scaffold_137_17
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

Not on your lists

comp(12199..12789)
DNA (591bp) protein (197aa)
Multiple antibiotic resistance protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N327_9ARCH
amino acid transporter Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
multiple antibiotic resistance protein
RIFOXYC2_FULL_CP_46_14_rifoxyc2_full_scaffold_137_18
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

Not on your lists

comp(12777..13712)
DNA (936bp) protein (312aa)
Polysaccharide pyruvyl transferase CsaB n=1 Tax=Thermoanaerobacter mathranii (strain DSM 11426 / CIP 108742 / A3) RepID=D7ARI2_THEM3
polysaccharide pyruvyl transferase CsaB Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
polysaccharide pyruvyl transferase CsaB
RIFOXYC2_FULL_CP_46_14_rifoxyc2_full_scaffold_137_19
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

Not on your lists

comp(13709..15520)
DNA (1812bp) protein (604aa)
Uncharacterized protein n=1 Tax=Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL) RepID=F6DNG5_DESRL
hypothetical protein Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
hypothetical protein
RIFOXYC2_FULL_CP_46_14_rifoxyc2_full_scaffold_137_20
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

Not on your lists

comp(15504..16478)
DNA (975bp) protein (325aa)
Peptide chain release factor 2 n=1 Tax=Thermoanaerobacter italicus (strain DSM 9252 / Ab9) RepID=D3T789_THEIA
hypothetical protein; K02836 peptide chain release factor 2 Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
hypothetical protein
RIFOXYC2_FULL_CP_46_14_rifoxyc2_full_scaffold_137_21
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

Not on your lists

comp(16451..18820)
DNA (2370bp) protein (790aa)
Protein translocase subunit SecA n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NDY4_DESAR
protein translocase subunit secA; K03070 preprotein translocase subunit SecA Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
protein translocase subunit secA
RIFOXYC2_FULL_CP_46_14_rifoxyc2_full_scaffold_137_22
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

Not on your lists

comp(18817..19179)
DNA (363bp) protein (121aa)
ribosomal subunit interface protein; K05808 putative sigma-54 modulation protein Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
SSU ribosomal protein S30P;sigma 54 modulation protein id=1828362 bin=GWE2_RBX1_39_32 species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
ribosomal subunit interface protein
RIFOXYC2_FULL_CP_46_14_rifoxyc2_full_scaffold_137_23
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

Not on your lists

comp(19211..19834)
DNA (624bp) protein (208aa)
Phosphoribosyltransferase Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
Amidophosphoribosyltransferase-like protein id=1913816 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Phosphoribosyltransferase
RIFOXYC2_FULL_CP_46_14_rifoxyc2_full_scaffold_137_24
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

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19917..20516
DNA (600bp) protein (200aa)
Putative transcriptional regulator Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
ATPase AAA id=1973882 bin=GWE2_RBX1_39_32 species=Chlorobaculum parvum genus=Chlorobaculum taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
transcriptional regulator
RIFOXYC2_FULL_CP_46_14_rifoxyc2_full_scaffold_137_25
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

Not on your lists

comp(20507..22096)
DNA (1590bp) protein (530aa)
phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (EC:5.4.2.1); K15633 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.1] Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=1 Tax=Selenomonas sputigena (strain ATCC 35185 / DSM 20758 / VPI D19B-28) RepID=C9LYH6_SELS3
RIFOXYC2_FULL_CP_46_14_rifoxyc2_full_scaffold_137_26
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

Not on your lists

comp(22133..22771)
DNA (639bp) protein (213aa)
Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
RIFOXYC2_FULL_CP_46_14_rifoxyc2_full_scaffold_137_27
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

Not on your lists

comp(22866..23462)
DNA (597bp) protein (199aa)
Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
RIFOXYC2_FULL_CP_46_14_rifoxyc2_full_scaffold_137_28
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

Not on your lists

comp(23459..24733)
DNA (1275bp) protein (425aa)
Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
RIFOXYC2_FULL_CP_46_14_rifoxyc2_full_scaffold_137_29
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

Not on your lists

25136..25873
DNA (738bp) protein (246aa)
triosephosphate isomerase ; K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
Triosephosphate isomerase n=1 Tax=Uncultured termite group 1 bacterium phylotype Rs-D17 RepID=TPIS_UNCTG
triosephosphate isomerase
RIFOXYC2_FULL_CP_46_14_rifoxyc2_full_scaffold_137_30
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

Not on your lists

25892..26866
DNA (975bp) protein (325aa)
fructose-bisphosphate aldolase (EC:4.1.2.13); K01624 fructose-bisphosphate aldolase, class II [EC:4.1.2.13] Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
fructose-bisphosphate aldolase (EC:4.1.2.13)
Fructose-bisphosphate aldolase id=2078213 bin=GWD2_RBX1-related_39_127 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
Displaying items 1-30 of 60 in total

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