ggKbase home page

RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_30

Search features with annotation key words

Displaying items 1-30 of 146 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_30_1
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(196..3435)
DNA (3240bp) protein (1080aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=K2CW04_9BACT
lipoprotein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
lipoprotein
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_30_2
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(3745..4317)
DNA (573bp) protein (191aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_30_3
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(4755..5012)
DNA (258bp) protein (86aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_30_4
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(5045..5386)
DNA (342bp) protein (114aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_30_5
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(5642..9310)
DNA (3669bp) protein (1223aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA036-E14 RepID=UPI00036717E3
hypothetical protein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
hypothetical protein
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_30_6
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(10200..11177)
DNA (978bp) protein (326aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA036-E14 RepID=UPI00037BB0F5
hypothetical protein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_30_7
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(11296..11856)
DNA (561bp) protein (187aa)
sigW; RNA polymerase sigma factor SigW; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RNA polymerase, sigma-24 subunit, ECF subfamily id=2110563 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
sigW; RNA polymerase sigma factor SigW
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_30_8
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

12651..13040
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA036-E14 RepID=UPI00036FEFF6
hypothetical protein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_30_9
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

13224..14996
DNA (1773bp) protein (591aa)
aldehyde ferredoxin oxidoreductase (EC:1.2.7.5) Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
aldehyde ferredoxin oxidoreductase (EC:1.2.7.5)
Aldehyde ferredoxin oxidoreductase id=2194024 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_30_10
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(15248..15529)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FC07_9BACT
DNA-binding protein (HU-like protein); K03530 DNA-binding protein HU-beta Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
DNA-binding protein, IHF-related
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_30_11
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(15665..15988)
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA036-E14 RepID=UPI000364141D
trxA; thioredoxin; K03671 thioredoxin 1 Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
trxA; thioredoxin
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_30_12
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

16145..18208
DNA (2064bp) protein (688aa)
recG; ATP-dependent DNA helicase RecG (EC:3.6.1.-); K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12] Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
ATP-dependent DNA helicase RecG id=2193978 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
ATP-dependent DNA helicase RecG
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_30_13
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

18240..18800
DNA (561bp) protein (187aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_30_14
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(19231..19761)
DNA (531bp) protein (177aa)
DNA-3-methyladenine glycosylase; K03652 DNA-3-methyladenine glycosylase [EC:3.2.2.21] Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Putative 3-methyladenine DNA glycosylase n=1 Tax=uncultured bacterium RepID=K2F1Z5_9BACT
DNA-3-methyladenine glycosylase
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_30_15
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(19822..21183)
DNA (1362bp) protein (454aa)
DNA repair protein RadA Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
DNA repair protein radA id=1743847 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
DNA repair protein RadA
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_30_16
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(21308..22078)
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA036-E14 RepID=UPI000374D369
hypothetical protein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
hypothetical protein
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_30_17
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(22120..22773)
DNA (654bp) protein (218aa)
id=1743850 Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
id=1743850 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_30_18
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(22984..24894)
DNA (1911bp) protein (637aa)
Type IV secretory pathway VirB4 components-like protein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Type IV secretory pathway VirB4 protein-like protein id=1743851 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
Type IV secretory pathway VirB4 components-like protein
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_30_19
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(25024..25707)
DNA (684bp) protein (228aa)
hypothetical protein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Putative uncharacterized protein id=1743853 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_30_20
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(25875..26327)
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA036-E14 RepID=UPI00035E9C90
hypothetical protein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_30_21
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(26510..28063)
DNA (1554bp) protein (518aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA036-E14 RepID=UPI000371E019
hypothetical protein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_30_22
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(28135..28839)
DNA (705bp) protein (235aa)
id=1743860 Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
id=1743860 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_30_23
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(28887..31445)
DNA (2559bp) protein (853aa)
coiled-coil 532..563 Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
coiled-coil 532..563 id=12944 bin=ACD18 species=ACD18 genus=ACD18 taxon_order=ACD18 taxon_class=ACD18 phylum=OD1 tax=ACD18 organism_group=OD1 (Parcubacteria) organism_desc= OD1
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_30_24
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(31462..31947)
DNA (486bp) protein (162aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_30_25
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(32105..33601)
DNA (1497bp) protein (499aa)
Apolipoprotein N-acyltransferase Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Apolipoprotein N-acyltransferase id=4731967 bin=GWC2_OD1_43_27 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_30_26
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(33594..42149)
DNA (8556bp) protein (2852aa)
Putative lipoprotein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Putative lipoprotein id=1743869 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_30_27
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(42237..42824)
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA036-E14 RepID=UPI000365C2D0
Peptidoglycan-associated outer membrane protein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
peptidoglycan-associated outer membrane protein
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_30_28
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists


comp(43027..43875)
DNA (849bp) protein (283aa)
dimethyladenosine transferase (EC:2.1.1.48); K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
dimethyladenosine transferase (EC:2.1.1.48)
Ribosomal RNA small subunit methyltransferase A id=1743875 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_30_29
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(44000..44527)
DNA (528bp) protein (176aa)
id=1743879 Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
id=1743879 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_30_30
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

44770..45732
DNA (963bp) protein (321aa)
id=1816787 Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
id=1816787 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
Displaying items 1-30 of 146 in total

View Taxonomy