ggKbase home page

RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_389

Search features with annotation key words

Displaying items 1-30 of 55 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_389_1
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists


169..603
DNA (435bp) protein (145aa)
30S ribosomal protein S15; K02956 small subunit ribosomal protein S15 Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
30S ribosomal protein S15 id=1899182 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
30S ribosomal protein S15
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_389_2
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

596..1090
DNA (495bp) protein (165aa)
hypothetical protein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Putative uncharacterized protein id=1899180 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_389_3
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

1171..3516
DNA (2346bp) protein (782aa)
polyribonucleotide nucleotidyltransferase Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Polyribonucleotide nucleotidyltransferase id=1899178 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
polyribonucleotide nucleotidyltransferase
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_389_4
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

3816..4754
DNA (939bp) protein (313aa)
UDP-glucose--hexose-1-phosphateuridylyltransfera se (EC:2.7.7.12); K00965 UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
UDP-glucose--hexose-1-phosphateuridylyltransfera se (EC:2.7.7.12)
UDP-galactose/glucose pyrophosphorylase id=1807450 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_389_5
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

4754..7699
DNA (2946bp) protein (982aa)
1A family penicillin-binding protein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Penicillin-binding protein, 1A family id=1807451 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_389_6
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(7753..8877)
DNA (1125bp) protein (375aa)
dnaN; DNA polymerase III, beta subunit (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7] Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
DNA polymerase III subunit beta id=1807452 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
DNA polymerase III subunit beta
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_389_7
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(8879..10237)
DNA (1359bp) protein (453aa)
dnaA; chromosomal replication initiator protein DnaA Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Chromosomal replication initiator protein DnaA id=1807453 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
chromosomal replication initiator protein DnaA
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_389_8
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists


10873..11010
DNA (138bp) protein (46aa)
50S ribosomal protein L34; K02914 large subunit ribosomal protein L34 Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
50S ribosomal protein L34 id=1807454 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
50S ribosomal protein L34
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_389_9
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

11027..11365
DNA (339bp) protein (113aa)
rnpA; ribonuclease P; K03536 ribonuclease P protein component [EC:3.1.26.5] Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
rnpA; ribonuclease P (EC:3.1.26.5)
Ribonuclease P protein component id=1807455 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_389_10
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

11367..11621
DNA (255bp) protein (85aa)
hypothetical protein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
hypothetical protein; K08998 hypothetical protein id=5091589 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
hypothetical protein
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_389_11
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

11650..12372
DNA (723bp) protein (241aa)
60 kDa inner membrane insertion protein; K03217 preprotein translocase subunit YidC Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Membrane protein insertase, YidC/Oxa1 family id=1807457 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
60 kDa inner membrane insertion protein
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_389_12
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(12442..13218)
DNA (777bp) protein (259aa)
id=1807458 Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
id=1807458 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_389_13
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(13273..13653)
DNA (381bp) protein (127aa)
hypothetical protein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Uncharacterized protein id=1807459 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_389_14
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

14191..15507
DNA (1317bp) protein (439aa)
Uncharacterized protein n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PCN8_9DELT
FAD linked oxidase domain-containing protein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
hypothetical protein
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_389_15
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

16061..16285
DNA (225bp) protein (75aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_389_16
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists


16509..17132
DNA (624bp) protein (208aa)
putative deoxyribonucleotide triphosphate pyrophosphatase; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19] Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Non-canonical purine NTP pyrophosphatase n=1 Tax=Methanotorris formicicus Mc-S-70 RepID=H1KY36_9EURY
putative deoxyribonucleotide triphosphate pyrophosphatase
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_389_17
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

17120..17374
DNA (255bp) protein (85aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_389_18
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(17557..18510)
DNA (954bp) protein (318aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_389_19
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

18859..20235
DNA (1377bp) protein (459aa)
transcription termination factor NusA; K02600 N utilization substance protein A Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Transcription termination factor NusA id=1981218 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
transcription termination factor NusA
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_389_20
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

20266..21195
DNA (930bp) protein (310aa)
manganese-dependent inorganic pyrophosphatase; K15986 manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1] Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
DHHA2 domain protein id=1981222 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
manganese-dependent inorganic pyrophosphatase
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_389_21
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

21402..21539
DNA (138bp) protein (46aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_389_22
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

21676..22962
DNA (1287bp) protein (429aa)
tig; trigger factor; K03545 trigger factor Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Trigger factor id=1981225 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
tig; trigger factor
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_389_23
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

23034..23552
DNA (519bp) protein (173aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_389_24
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

23616..23837
DNA (222bp) protein (74aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_389_25
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(23879..24421)
DNA (543bp) protein (181aa)
AMMECR1 domain-containing protein; K09141 hypothetical protein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
AMMECR1-domain protein id=4309229 bin=GWA2_OP3_53_43 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
hypothetical protein
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_389_26
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(24435..24923)
DNA (489bp) protein (163aa)
phosphodiesterase, MJ0936 family; K07095 Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Phosphodiesterase, MJ0936 family id=1899110 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
phosphodiesterase, MJ0936 family
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_389_27
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(24930..26069)
DNA (1140bp) protein (380aa)
putative amino acid permease Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Aromatic amino acid permease id=1899111 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
putative amino acid permease
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_389_28
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(26116..26712)
DNA (597bp) protein (199aa)
haloacid dehalogenase; K07477 translin Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Putative uncharacterized protein id=1899112 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
haloacid dehalogenase
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_389_29
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(26805..29834)
DNA (3030bp) protein (1010aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FC14_9BACT
pilB; type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; K02652 type IV pilus assembly protein PilB Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
type II secretion system protein E
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_389_30
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(29974..30921)
DNA (948bp) protein (316aa)
id=1899114 Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
id=1899114 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
Displaying items 1-30 of 55 in total

View Taxonomy