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RIFOXYD12_FULL_Deltaproteobacteria_56_24_rifoxyd3_full_scaffold_994

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYD12_FULL_Deltaproteobacteria_56_24_rifoxyd3_full_scaffold_994_1
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(381..1331)
DNA (951bp) protein (317aa)
pyruvate carboxyltransferase; K01666 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
Putative uncharacterized protein n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YHH4_9DELT
pyruvate carboxyltransferase
RIFOXYD12_FULL_Deltaproteobacteria_56_24_rifoxyd3_full_scaffold_994_2
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1380..2009)
DNA (630bp) protein (210aa)
2-dehydro-3-deoxyphosphogluconate aldolase; K01625 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.16] Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_cu
Putative uncharacterized protein n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YHH5_9DELT
2-dehydro-3-deoxyphosphogluconate aldolase
RIFOXYD12_FULL_Deltaproteobacteria_56_24_rifoxyd3_full_scaffold_994_3
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2400..4934)
DNA (2535bp) protein (845aa)
ATP-dependent helicase HrpB; K03579 ATP-dependent helicase HrpB [EC:3.6.4.13] Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
ATP-dependent helicase HrpB n=1 Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z2B4_DESAT
ATP-dependent helicase HrpB
RIFOXYD12_FULL_Deltaproteobacteria_56_24_rifoxyd3_full_scaffold_994_4
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4931..5716)
DNA (786bp) protein (262aa)
ADA regulatory protein; K10778 AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] Tax=RIFOXYD12_FULL_D
ADA regulatory protein n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LMI5_RUEPO
ADA regulatory protein
RIFOXYD12_FULL_Deltaproteobacteria_56_24_rifoxyd3_full_scaffold_994_5
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6229..7026
DNA (798bp) protein (266aa)
Putative redox-active protein n=1 Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1PBZ7_DESSD
Putative redox-active protein Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
Putative redox-active protein
RIFOXYD12_FULL_Deltaproteobacteria_56_24_rifoxyd3_full_scaffold_994_6
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7308..8675
DNA (1368bp) protein (456aa)
Putative sulfur transferase, selenocysteine-containing protein n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YL75_THEYD
sulfur transferase, selenocysteine-containing protein Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
sulfur transferase
RIFOXYD12_FULL_Deltaproteobacteria_56_24_rifoxyd3_full_scaffold_994_7
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8919..9761
DNA (843bp) protein (281aa)
phosphonate ABC transporter periplasmic phosphonate-binding protein Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
Phosphonate-binding periplasmic protein id=2096768 bin=GWB2_Nitrospirae_rel_47_37 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
phosphonate ABC transporter periplasmic phosphonate-binding protein
RIFOXYD12_FULL_Deltaproteobacteria_56_24_rifoxyd3_full_scaffold_994_8
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9758..11506
DNA (1749bp) protein (583aa)
PAS:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A-like n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NX05_9DELT
PAS/PAC sensor signal transduction histidine kinase Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
ATPase
RIFOXYD12_FULL_Deltaproteobacteria_56_24_rifoxyd3_full_scaffold_994_9
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11475..12869
DNA (1395bp) protein (465aa)
Fis family transcriptional regulator Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
Two component, sigma54 specific, transcriptional regulator, Fis family id=2096770 bin=GWB2_Nitrospirae_rel_47_37 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
Fis family transcriptional regulator
RIFOXYD12_FULL_Deltaproteobacteria_56_24_rifoxyd3_full_scaffold_994_10
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12909..13436)
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Geopsychrobacter electrodiphilus RepID=UPI000375E613
hypothetical protein Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
hypothetical protein
RIFOXYD12_FULL_Deltaproteobacteria_56_24_rifoxyd3_full_scaffold_994_11
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13502..13978)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NVQ7_9DELT
PAS/PAC sensor protein Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
PAS/PAC sensor protein
RIFOXYD12_FULL_Deltaproteobacteria_56_24_rifoxyd3_full_scaffold_994_12
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13975..15360)
DNA (1386bp) protein (462aa)
PAS:Stage II sporulation E n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NMJ0_9DELT
PAS/PAC sensor protein Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
PAS/PAC sensor protein
RIFOXYD12_FULL_Deltaproteobacteria_56_24_rifoxyd3_full_scaffold_994_13
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15366..18002)
DNA (2637bp) protein (879aa)
GGDEF:EAL n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NMJ1_9DELT
diguanylate cyclase/phosphodiesterase Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
diguanylate cyclase/phosphodiesterase
RIFOXYD12_FULL_Deltaproteobacteria_56_24_rifoxyd3_full_scaffold_994_14
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18227..19735)
DNA (1509bp) protein (503aa)
Chemotaxis sensory transducer n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NPE4_9DELT
methyl-accepting chemotaxis sensory transducer; K03406 methyl-accepting chemotaxis protein Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
methyl-accepting chemotaxis sensory transducer
RIFOXYD12_FULL_Deltaproteobacteria_56_24_rifoxyd3_full_scaffold_994_15
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19784..20095)
DNA (312bp) protein (104aa)
Sulfate transporter/antisigma-factor antagonist STAS n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NPE5_9DELT
anti-sigma-factor antagonist Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
anti-sigma-factor antagonist
RIFOXYD12_FULL_Deltaproteobacteria_56_24_rifoxyd3_full_scaffold_994_16
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20529..20639
DNA (111bp) protein (37aa)
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
RIFOXYD12_FULL_Deltaproteobacteria_56_24_rifoxyd3_full_scaffold_994_17
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20727..21308
DNA (582bp) protein (194aa)
RpoE; DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
RNA polymerase sigma factor id=2299585 bin=GWB2_Nitrospirae_rel_47_37 species=Limnobacter sp. MED105 genus=Limnobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
RpoE; DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein
RIFOXYD12_FULL_Deltaproteobacteria_56_24_rifoxyd3_full_scaffold_994_18
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21509..21961
DNA (453bp) protein (151aa)
Putative transmembrane transcriptional regulator (Anti-sigma factor) Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
Putative transmembrane transcriptional regulator (Anti-sigma factor) id=2779117 bin=GWC2_Nitrospirae-rel_56_14 species=Albidiferax ferrireducens genus=Albidiferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
RIFOXYD12_FULL_Deltaproteobacteria_56_24_rifoxyd3_full_scaffold_994_19
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21951..22430
DNA (480bp) protein (160aa)
Putative uncharacterized protein Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
Putative uncharacterized protein id=2299587 bin=GWB2_Nitrospirae_rel_47_37 species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
RIFOXYD12_FULL_Deltaproteobacteria_56_24_rifoxyd3_full_scaffold_994_20
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22412..23716
DNA (1305bp) protein (435aa)
type I secretion outer membrane protein Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
Type I secretion outer membrane protein id=2299588 bin=GWB2_Nitrospirae_rel_47_37 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
type I secretion outer membrane protein
RIFOXYD12_FULL_Deltaproteobacteria_56_24_rifoxyd3_full_scaffold_994_21
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23719..24807
DNA (1089bp) protein (363aa)
RND family efflux transporter, MFP subunit Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
RND family efflux transporter, MFP subunit id=2299589 bin=GWB2_Nitrospirae_rel_47_37 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
RND family efflux transporter, MFP subunit
RIFOXYD12_FULL_Deltaproteobacteria_56_24_rifoxyd3_full_scaffold_994_22
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24820..25500
DNA (681bp) protein (227aa)
ABC-type antimicrobial peptide transport system, ATPase component Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
ABC transporter, ATP-binding protein id=2299590 bin=GWB2_Nitrospirae_rel_47_37 species=Clostridiaceae bacterium L21-TH-D2 genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
ABC-type antimicrobial peptide transport system, ATPase component
RIFOXYD12_FULL_Deltaproteobacteria_56_24_rifoxyd3_full_scaffold_994_23
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25500..26711
DNA (1212bp) protein (404aa)
ABC-type antimicrobial peptide transport system, permease component Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
ABC-type antimicrobial peptide transport system, permease component id=2299591 bin=GWB2_Nitrospirae_rel_47_37 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
ABC-type antimicrobial peptide transport system, permease component
RIFOXYD12_FULL_Deltaproteobacteria_56_24_rifoxyd3_full_scaffold_994_24
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26712..27551
DNA (840bp) protein (280aa)
ABC-type antimicrobial peptide transport system, permease component Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
ABC-type antimicrobial peptide transport system, permease component id=3661331 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
ABC-type antimicrobial peptide transport system, permease component
Displaying 24 items

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