ggKbase home page

RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_181

Search features with annotation key words

Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_181_1
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

161..1093
DNA (933bp) protein (311aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_181_2
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

1258..1383
DNA (126bp) protein (42aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_181_3
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

1380..2432
DNA (1053bp) protein (351aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_181_4
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

2542..3156
DNA (615bp) protein (205aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_181_5
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(3244..4956)
DNA (1713bp) protein (571aa)
carbamoyltransferase; K00612 carbamoyltransferase [EC:2.1.3.-] Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Nodulation protein U id=1898286 bin=GWE2_Bacteroidetes_32_14 species=Streptomyces himastatinicus genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWE2_Bacteroidetes_32_14 organism_group=Bacteroidetes organism_desc=Good +
hypothetical protein
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_181_6
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(5017..6267)
DNA (1251bp) protein (417aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000369F43E
sulfatase Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
sulfatase
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_181_7
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(6379..6972)
DNA (594bp) protein (198aa)
Nitrate/sulfonate/bicarbonate ABC transport system substrate binding protein SsuA1 n=1 Tax=Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655) RepID=H6LC62_ACEWD
ssuA1; nitrate/sulfonate/bicarbonate ABC transport system substrate binding protein SsuA1; K02049 NitT/TauT family transport system ATP-binding protein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_cura
ssuA1; nitrate/sulfonate/bicarbonate ABC transport system substrate binding protein SsuA1
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_181_8
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(6965..7615)
DNA (651bp) protein (217aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=1 Tax=Clostridium termitidis CT1112 RepID=S0FRL0_9CLOT
nitrate ABC transporter permease Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
nitrate ABC transporter permease
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_181_9
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(7628..8635)
DNA (1008bp) protein (336aa)
Putative periplasmic substrate-binding protein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Putative periplasmic substrate-binding protein id=4958411 bin=GWA2_Elusi_like_61_42 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusi_like_61_42 organism_group=Elusimicrobia organism_desc=Possibly not Elusi
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_181_10
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(8752..9900)
DNA (1149bp) protein (383aa)
Putative arylsulphatase n=1 Tax=Streptomyces sp. W007 RepID=H0BGX7_9ACTO
arylsulfatase Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
arylsulfatase
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_181_11
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(9913..10254)
DNA (342bp) protein (114aa)
panD; aspartate 1-decarboxylase; K01579 aspartate 1-decarboxylase [EC:4.1.1.11] Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
hypothetical protein n=1 Tax=Thiothrix flexilis RepID=UPI000367C27D
panD; aspartate 1-decarboxylase
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_181_12
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

10509..11786
DNA (1278bp) protein (426aa)
Membrane protein, putative n=1 Tax=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) RepID=Q04KM4_STRP2
hypothetical protein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
hypothetical protein
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_181_13
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(11998..12384)
DNA (387bp) protein (129aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_181_14
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(12581..12832)
DNA (252bp) protein (84aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_181_15
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(12964..14178)
DNA (1215bp) protein (405aa)
tRNA-guanine transglycosylase; K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29] Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
vsp:VS_0599 tgt; queuine tRNA-ribosyltransferase; K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29] id=84244 bin=ACD56 species=ACD56 genus=ACD56 taxon_order=ACD56 taxon_class=ACD56 phylum=OD1-i tax=ACD56 organism_group=OD1-i organism_desc=OD1-i
tRNA-guanine transglycosylase (EC:2.4.2.29)
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_181_16
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(14383..16350)
DNA (1968bp) protein (656aa)
id=2178745 Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
id=2178745 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_181_17
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(16434..16574)
DNA (141bp) protein (47aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_181_18
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(16574..17089)
DNA (516bp) protein (172aa)
id=2178744 Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
id=2178744 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_181_19
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

17268..18914
DNA (1647bp) protein (549aa)
alpha-glucan phosphorylase; K00688 starch phosphorylase [EC:2.4.1.1] Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
alpha-glucan phosphorylase (EC:2.4.1.1)
Uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F1K5_9PROT
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_181_20
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(19133..20062)
DNA (930bp) protein (310aa)
nifR3 family TIM-barrel protein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
tRNA-dihydrouridine synthase id=2178742 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
nifR3 family TIM-barrel protein
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_181_21
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

20754..22685
DNA (1932bp) protein (644aa)
id=2169529 Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
id=2169529 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_181_22
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

22849..23322
DNA (474bp) protein (158aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_181_23
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

23319..24380
DNA (1062bp) protein (354aa)
Marine sediment metagenome DNA, contig: S03H2_S10808 Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_181_24
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

24381..24602
DNA (222bp) protein (74aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_181_25
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

24599..25018
DNA (420bp) protein (140aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_181_26
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(25101..26336)
DNA (1236bp) protein (412aa)
cysteine desulfurase NifS; K04487 cysteine desulfurase [EC:2.8.1.7] Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA036-E14 RepID=UPI00036B4A60
cysteine desulfurase NifS
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_181_27
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(26475..26714)
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA036-E14 RepID=UPI000375E239
thioredoxin-like protein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
thioredoxin-like protein
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_181_28
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(26764..27129)
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA036-E14 RepID=UPI0003737F74
IscU; NifU-like protein; K04488 nitrogen fixation protein NifU and related proteins Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
IscU; NifU-like protein
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_181_29
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(27179..27919)
DNA (741bp) protein (247aa)
calcium-binding protein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Thrombospondin type 3 repeat superfamily protein (Fragment) id=2193907 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
calcium-binding protein
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_181_30
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(28031..28435)
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA036-E14 RepID=UPI000363109D
rrf2 family protein, putative transcriptional regulator Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
rrf2 family protein, putative transcriptional regulator
Displaying items 1-30 of 59 in total

View Taxonomy