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RIFOXYD1_FULL_CP_56_27_rifoxyd1_full_scaffold_441

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Displaying 26 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYD1_FULL_CP_56_27_rifoxyd1_full_scaffold_441_1
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

283..705
DNA (423bp) protein (141aa)
Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
RIFOXYD1_FULL_CP_56_27_rifoxyd1_full_scaffold_441_2
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

comp(709..1539)
DNA (831bp) protein (277aa)
Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
RIFOXYD1_FULL_CP_56_27_rifoxyd1_full_scaffold_441_3
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

comp(1539..2882)
DNA (1344bp) protein (448aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. 9_1_42FAA RepID=C3PVF7_9BACE
hypothetical protein Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
hypothetical protein
RIFOXYD1_FULL_CP_56_27_rifoxyd1_full_scaffold_441_4
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

comp(2875..3678)
DNA (804bp) protein (268aa)
Methyltransferase domain protein n=1 Tax=Tannerella forsythia (strain ATCC 43037 / JCM 10827 / FDC 338) RepID=G8UQR0_TANFA
methyltransferase domain-containing protein Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
methyltransferase domain-containing protein
RIFOXYD1_FULL_CP_56_27_rifoxyd1_full_scaffold_441_5
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

comp(3804..4910)
DNA (1107bp) protein (369aa)
response regulator receiver sensor signal transduction histidine kinase Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
Response regulator receiver sensor signal transduction histidine kinase id=3707100 bin=GWB1_CP_36_13 species=Clostridium saccharoperbutylacetonicum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
response regulator receiver protein
RIFOXYD1_FULL_CP_56_27_rifoxyd1_full_scaffold_441_6
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

comp(4894..8610)
DNA (3717bp) protein (1239aa)
PAS domain S-box n=1 Tax=Oscillatoria acuminata PCC 6304 RepID=K9TI69_9CYAN
PAS domain-containing protein Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
PAS domain-containing protein
RIFOXYD1_FULL_CP_56_27_rifoxyd1_full_scaffold_441_7
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

comp(8772..10715)
DNA (1944bp) protein (648aa)
type 11 methyltransferase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
Methyltransferase type 11 n=2 Tax=Thermotoga RepID=A5IJL4_THEP1
type 11 methyltransferase
RIFOXYD1_FULL_CP_56_27_rifoxyd1_full_scaffold_441_8
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

11204..11770
DNA (567bp) protein (189aa)
Putative uncharacterized protein n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KP34_9BURK
urease accessory protein UreJ; K03192 urease accessory protein Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
ureJ; urease accessory protein UreJ
RIFOXYD1_FULL_CP_56_27_rifoxyd1_full_scaffold_441_9
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

11777..12127
DNA (351bp) protein (117aa)
Probable hydrogenase nickel incorporation protein HypA n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5IPB8_9CHRO
hypA; hydrogenase nickel incorporation protein; K04651 hydrogenase nickel incorporation protein HypA/HybF Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
hypA; hydrogenase nickel incorporation protein
RIFOXYD1_FULL_CP_56_27_rifoxyd1_full_scaffold_441_10
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

12143..12985
DNA (843bp) protein (281aa)
Hydrogenase nickel incorporation protein hypB n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FMT6_PHAMO
hydrogenase nickel incorporation protein HypB; K04652 hydrogenase nickel incorporation protein HypB Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
hydrogenase nickel incorporation protein HypB
RIFOXYD1_FULL_CP_56_27_rifoxyd1_full_scaffold_441_11
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

12990..14093
DNA (1104bp) protein (368aa)
hydrogenase (NiFe) small subunit HydA; K06282 hydrogenase small subunit [EC:1.12.99.6] Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
Hydrogenase (NiFe) small subunit HydA n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TLP3_NIAKG
hydrogenase (NiFe) small subunit HydA
RIFOXYD1_FULL_CP_56_27_rifoxyd1_full_scaffold_441_12
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

14090..15811
DNA (1722bp) protein (574aa)
cytochrome-c3 hydrogenase; K06281 hydrogenase large subunit [EC:1.12.99.6] Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
Nickel-dependent hydrogenase large subunit id=4121327 bin=GWF2_Bacteroidetes_41_31 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
cytochrome-c3 hydrogenase
RIFOXYD1_FULL_CP_56_27_rifoxyd1_full_scaffold_441_13
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

15821..16498
DNA (678bp) protein (226aa)
NiFe hydrogenase small subunit, HupC n=5 Tax=Bacteroidales RepID=A6LCY8_PARD8
NiFe hydrogenase small subunit, HupC; K03620 Ni/Fe-hydrogenase 1 B-type cytochrome subunit Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
NiFe hydrogenase small subunit, HupC
RIFOXYD1_FULL_CP_56_27_rifoxyd1_full_scaffold_441_14
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

16502..17023
DNA (522bp) protein (174aa)
hydrogenase maturation protease; K08567 hydrogenase 2 maturation protease [EC:3.4.24.-] Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
Hydrogenase maturation protease id=4121324 bin=GWF2_Bacteroidetes_41_31 species=Haliscomenobacter hydrossis genus=Haliscomenobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
hydrogenase maturation protease
RIFOXYD1_FULL_CP_56_27_rifoxyd1_full_scaffold_441_15
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

17020..19299
DNA (2280bp) protein (760aa)
(NiFe) hydrogenase maturation protein HypF n=1 Tax=Cyanothece sp. (strain PCC 8801) RepID=B7K1K8_CYAP8
(NiFe) hydrogenase maturation protein HypF; K04656 hydrogenase maturation protein HypF Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
(NiFe) hydrogenase maturation protein HypF
RIFOXYD1_FULL_CP_56_27_rifoxyd1_full_scaffold_441_16
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

19277..19510
DNA (234bp) protein (78aa)
Hydrogenase assembly chaperone hypC/hupF n=1 Tax=Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) RepID=D3PVJ5_STANL
hydrogenase assembly chaperone HypC/HupF; K04653 hydrogenase expression/formation protein HypC Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
hydrogenase assembly chaperone HypC/HupF
RIFOXYD1_FULL_CP_56_27_rifoxyd1_full_scaffold_441_17
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

19507..20505
DNA (999bp) protein (333aa)
hydrogenase n=1 Tax=Methylosarcina fibrata RepID=UPI0003797EF6
hypE; hydrogenase expression/formation protein HypE; K04655 hydrogenase expression/formation protein HypE Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
hydrogenase isoproteins formation protein
RIFOXYD1_FULL_CP_56_27_rifoxyd1_full_scaffold_441_18
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

20509..21297
DNA (789bp) protein (263aa)
Formyl transferase domain protein n=1 Tax=Psychromonas ingrahamii (strain 37) RepID=A1SU76_PSYIN
formyl transferase domain-containing protein Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
formyl transferase domain-containing protein
RIFOXYD1_FULL_CP_56_27_rifoxyd1_full_scaffold_441_19
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

21298..22098
DNA (801bp) protein (267aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Psychromonas ingrahamii (strain 37) RepID=A1SU75_PSYIN
enoyl-CoA hydratase/isomerase Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
enoyl-CoA hydratase/isomerase
RIFOXYD1_FULL_CP_56_27_rifoxyd1_full_scaffold_441_20
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

comp(22165..22710)
DNA (546bp) protein (182aa)
Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
RIFOXYD1_FULL_CP_56_27_rifoxyd1_full_scaffold_441_21
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

22849..23703
DNA (855bp) protein (285aa)
peptidase M48, Ste24p; K03799 heat shock protein HtpX [EC:3.4.24.-] Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
Peptidase M48, Ste24p n=2 Tax=Nitrosococcus oceani RepID=Q3JAU5_NITOC
peptidase M48, Ste24p
RIFOXYD1_FULL_CP_56_27_rifoxyd1_full_scaffold_441_22
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

comp(23700..24176)
DNA (477bp) protein (159aa)
bacterioferritin comigratory protein BCP; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15] Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
Bacterioferritin comigratory protein BCP n=1 Tax=Persephonella marina (strain DSM 14350 / EX-H1) RepID=C0QTZ2_PERMH
bacterioferritin comigratory protein BCP
RIFOXYD1_FULL_CP_56_27_rifoxyd1_full_scaffold_441_23
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

comp(24211..26700)
DNA (2490bp) protein (830aa)
PAS/PAC sensor hybrid histidine kinase n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LKN4_SYNFM
multi-sensor hybrid histidine kinase Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
sensory box histidine kinase/response regulator
RIFOXYD1_FULL_CP_56_27_rifoxyd1_full_scaffold_441_24
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

27005..28687
DNA (1683bp) protein (561aa)
Iron-sulfur-binding protein, glutamate synthase (DsrL/gltD) n=1 Tax=uncultured sulfate-reducing bacterium RepID=Q3IBL4_9BACT
FAD-dependent pyridine nucleotide-disulfide oxidoreductase Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
RIFOXYD1_FULL_CP_56_27_rifoxyd1_full_scaffold_441_25
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

28752..29234
DNA (483bp) protein (161aa)
sulfurtransferase n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00036863EE
Rhodanese domain-containing protein Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
rhodanese domain-containing protein
RIFOXYD1_FULL_CP_56_27_rifoxyd1_full_scaffold_441_26
RIFOXYD1_FULL_Proteobacteria_56_27_curated, Proteobacteria, Bacteria

Not on your lists

29694..30323
DNA (630bp) protein (210aa)
Tax=RIFOXYD1_FULL_Proteobacteria_56_27_curated
Displaying 26 items

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