ggKbase home page

RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_2075

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_2075_1
R_SM2F11_43_13b, SM2F11, Bacteria

Not on your lists

comp(2..205)
DNA (204bp) protein (68aa)
Tax=RIFCSPHIGHO2_02_FULL_SM2F11_43_13b_curated
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_2075_2
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(280..762)
DNA (483bp) protein (161aa)
Response regulator containing a CheY-like protein receiver domain and an HD-GYP protein n=1 Tax=uncultured bacterium RepID=K2AFZ6_9BACT
histidine kinase Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
hypothetical protein
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_2075_3
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(716..1900)
DNA (1185bp) protein (395aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036CF78F
multi-sensor signal transduction histidine kinase Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
multi-sensor signal transduction histidine kinase
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_2075_4
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

1995..3212
DNA (1218bp) protein (406aa)
DEAD/DEAH box helicase; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13] Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
DEAD/DEAH box helicase; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13] id=5098401 bin=PER_GWF2_43_18 species=PER_GWF2_42_17 genus=PER_GWF2_42_17 taxon_order=PER_GWF2_42_17 taxon_class=PER_GWF2_42_17 phylum=PER tax=PER_GWF2_43_18 organism_group=PER (Peregrinibacteria)
ATP-dependent RNA helicase RhlE
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_2075_5
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

3193..4449
DNA (1257bp) protein (419aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2F375_9BACT
hypothetical protein; K07007 Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
hypothetical protein
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_2075_6
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

4572..4895
DNA (324bp) protein (108aa)
RNA-binding protein RNP-3 Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
Glycine-rich RNA-binding protein GRP1A id=3012495 bin=GWC1_OD1_38_17 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RNA-binding protein
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_2075_7
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(5009..5401)
DNA (393bp) protein (131aa)
plastocyanin Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
plastocyanin id=5085106 bin=GWA2_OP11_43_14 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA2_OP11_43_14 organism_group=OP11 (Microgenomates) organism_desc=GWA2_OP11_2
Blue (Type 1) copper protein
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_2075_8
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(5576..6118)
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI0003615D0F
phaN; repressor; K02616 phenylacetic acid degradation operon negative regulatory protein Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
phaN; repressor
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_2075_9
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

6413..6757
DNA (345bp) protein (115aa)
Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_2075_10
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

6944..8773
DNA (1830bp) protein (610aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2CYU0_9BACT
GTP-binding protein TypA/BipA; K06207 GTP-binding protein Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
GTP-binding protein TypA/BipA
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_2075_11
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

8816..9082
DNA (267bp) protein (89aa)
Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_2075_12
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

9108..10076
DNA (969bp) protein (323aa)
GTPase Obg n=1 Tax=uncultured bacterium RepID=K2FE66_9BACT
obgE; GTPase ObgE; K03979 GTP-binding protein Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
obgE; GTPase ObgE
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_2075_13
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

10114..10242
DNA (129bp) protein (43aa)
Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_2075_14
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(10304..10714)
DNA (411bp) protein (137aa)
id=2899561 Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
id=2899561 bin=GWA1_ZB2_49_26 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_2075_15
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(10760..14716)
DNA (3957bp) protein (1319aa)
hypothetical protein Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
Uncharacterized protein (Fragment) id=2899562 bin=GWA1_ZB2_49_26 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
hypothetical protein
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_2075_16
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(14766..15008)
DNA (243bp) protein (81aa)
Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_2075_17
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(15005..16219)
DNA (1215bp) protein (405aa)
hypothetical protein Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
Retron-type reverse transcriptase id=2169465 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_2075_18
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(16360..16650)
DNA (291bp) protein (97aa)
excinuclease ABC subunit C Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
Excinuclease ABC subunit C domain-containing protein; K07461 putative endonuclease id=5803333 bin=OD1_GWC2_34_28 species=ACD1 genus=ACD1 taxon_order=ACD1 taxon_class=ACD1 phylum=OD1-i tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Excinuclease ABC subunit C domain-containing protein
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_2075_19
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(16640..17020)
DNA (381bp) protein (127aa)
prophage antirepressor Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
Prophage antirepressor id=5017477 bin=GWA2_CPR4_42_17 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
prophage antirepressor
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_2075_20
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(17029..17388)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DRF9_9BACT
Uncharacterized protein Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_2075_21
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(18483..19307)
DNA (825bp) protein (275aa)
Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
Displaying 21 items

View Taxonomy