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RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_267

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_267_1
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

45..2885
DNA (2841bp) protein (947aa)
Isoleucyl-tRNA synthetase (EC:6.1.1.5); K01870 isoleucyl-tRNA synthetase [EC:6.1.1.5] Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
Isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase n=1 Tax=uncultured bacterium RepID=K2B9A4_9BACT
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_267_2
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

2896..4062
DNA (1167bp) protein (389aa)
id=4268767 Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
id=4268767 bin=GWF2_CPR3_35_18 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_CPR3_35_18 organism_group=CPR3
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_267_3
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

4078..4785
DNA (708bp) protein (236aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000364213F
DNA repair protein RecO; K03584 DNA repair protein RecO (recombination protein O) Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
DNA repair protein RecO
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_267_4
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

4822..6483
DNA (1662bp) protein (554aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000380028E
hypothetical protein Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_267_5
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists


6497..7786
DNA (1290bp) protein (430aa)
glycyl-tRNA synthetase; K01880 glycyl-tRNA synthetase [EC:6.1.1.14] Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000378924E
glycyl-tRNA synthetase
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_267_6
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

7765..9033
DNA (1269bp) protein (423aa)
M16 family peptidase (EC:3.4.24.-)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000369C730
mlpA; specific processing protease Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_267_7
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

9033..10064
DNA (1032bp) protein (344aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00037F9E5D
hypothetical protein Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
hypothetical protein
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_267_8
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(10135..10590)
DNA (456bp) protein (152aa)
transmembrane_regions 7..29 Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
transmembrane_regions 7..29 id=86231 bin=ACD58 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_267_9
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists


10635..12077
DNA (1443bp) protein (481aa)
methionyl-tRNA synthetase; K01874 methionyl-tRNA synthetase [EC:6.1.1.10] Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1YE57_9BACT
methionyl-tRNA synthetase
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_267_10
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists


12132..12395
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000371EFDE
rpsT; 30S ribosomal protein S20; K02968 small subunit ribosomal protein S20 Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
rpsT; 30S ribosomal protein S20
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_267_11
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(12366..13304)
DNA (939bp) protein (313aa)
DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta [EC:2.7.7.7] Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00038015F3
DNA polymerase III subunit delta
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_267_12
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(13301..14170)
DNA (870bp) protein (290aa)
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23); K10563 formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036A1C0A
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_267_13
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(14170..14775)
DNA (606bp) protein (202aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036CCD0D
integral membrane sensor signal transduction histidine kinase Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
integral membrane sensor signal transduction histidine kinase
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_267_14
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(14791..15687)
DNA (897bp) protein (299aa)
polA-2; DNA polymerase I (EC:2.7.7.7); K02335 DNA polymerase I [EC:2.7.7.7] Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
polA-2; DNA polymerase I (EC:2.7.7.7)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00035E28E1
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_267_15
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(15699..16175)
DNA (477bp) protein (159aa)
hypothetical protein; K06925 UPF0079 ATP-binding protein Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
Putative uncharacterized protein id=4523402 bin=GWF2_Planctomycetes_50_10 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
ydiB; YdiB
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_267_16
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

16260..16829
DNA (570bp) protein (190aa)
Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_267_17
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

16832..18043
DNA (1212bp) protein (404aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00037D32EB
type II secretion system protein E; K02652 type IV pilus assembly protein PilB Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
type II secretion system protein E
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_267_18
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

18232..19245
DNA (1014bp) protein (338aa)
ruvB; Holliday junction DNA helicase RuvB (EC:3.1.22.4); K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=uncultured bacterium RepID=K2AJ42_9BACT
Holliday junction DNA helicase RuvB
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_267_19
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(19445..20995)
DNA (1551bp) protein (517aa)
Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_267_20
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(21322..21996)
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1Z103_9BACT
hypothetical protein Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
hypothetical protein
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_267_21
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists


comp(22241..22705)
DNA (465bp) protein (155aa)
50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
50S ribosomal protein L19 id=3486284 bin=GWA1_ZB2_49_26 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
50S ribosomal protein L19
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_267_22
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(22764..23516)
DNA (753bp) protein (251aa)
putative pseudouridine synthase; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036BCDA1
putative pseudouridine synthase
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_267_23
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(23522..23704)
DNA (183bp) protein (61aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00036B6A62
hypothetical protein Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
YcfA family protein
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_267_24
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(23727..23960)
DNA (234bp) protein (78aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00036E2F04
hypothetical protein Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
hypothetical protein
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_267_25
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(24301..26127)
DNA (1827bp) protein (609aa)
ftsH; cell division protein FtsH; K03798 cell division protease FtsH [EC:3.4.24.-] Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000374B29A
ftsH; cell division protein FtsH
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_267_26
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(26237..27535)
DNA (1299bp) protein (433aa)
Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_267_27
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

27699..27941
DNA (243bp) protein (81aa)
Carbon storage regulator homolog n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZL08_9PLAN
carbon storage regulator CsrA; K03563 carbon storage regulator Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
carbon storage regulator CsrA
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_267_28
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

28033..28761
DNA (729bp) protein (243aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00035F497A
deoxyribonuclease, TatD Mg-dependent Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
deoxyribonuclease, TatD Mg-dependent
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_267_29
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists


29309..31789
DNA (2481bp) protein (827aa)
leuS; leucyl-tRNA ligase LeuS (EC:6.1.1.4) Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
leuS; leucyl-tRNA ligase LeuS (EC:6.1.1.4)
Leucine--tRNA ligase n=1 Tax=Clostridiales bacterium BV3C26 RepID=U7USF5_9FIRM
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_267_30
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

31796..33538
DNA (1743bp) protein (581aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000379C9F9
hypothetical protein Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
hypothetical protein
Displaying items 1-30 of 47 in total

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