ggKbase home page

RTP_01242018_0_2um_scaffold_1008

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_01242018_0_2um_scaffold_1008_1
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..2600)
DNA (2598bp) protein (866aa)
magnesium-transporting ATPase n=1 Tax=Verminephrobacter aporrectodeae RepID=UPI0002377B60
Magnesium-transporting ATPase MgtA {ECO:0000313|EMBL:GAO23397.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
magnesium ABC transporter ATPase
RTP_01242018_0_2um_scaffold_1008_2
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2858..4030
DNA (1173bp) protein (391aa)
FlhB flagellar biosynthetic protein n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SZT0_JANMA
Flagellar biosynthesis protein FlhB {ECO:0000313|EMBL:KIF82173.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
flhB; FlhB flagellar biosynthetic protein
RTP_01242018_0_2um_scaffold_1008_3
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4027..6108
DNA (2082bp) protein (694aa)
flagellar biosynthesis protein FlhA n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002F851F5
Flagellar biosynthesis protein FlhA {ECO:0000313|EMBL:KIF82172.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
flhA; FlhA flagellar biosynthesis protein
RTP_01242018_0_2um_scaffold_1008_4
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6105..7370
DNA (1266bp) protein (422aa)
FlhF flagellar biosynthesis protein n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SZS8_JANMA
flhF; flagellar biosynthesis regulator FlhF
FlhF flagellar biosynthesis protein {ECO:0000313|EMBL:ABR89179.1}; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
RTP_01242018_0_2um_scaffold_1008_5
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7318..8142
DNA (825bp) protein (275aa)
Putative Antiactivator of flagellar biosynthesis FleN n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G4P9_HERAR
MotR protein
Putative Antiactivator of flagellar biosynthesis FleN {ECO:0000313|EMBL:CAL61486.1}; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
RTP_01242018_0_2um_scaffold_1008_6
Janthinobacterium agaricidamnosum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8146..8877
DNA (732bp) protein (244aa)
flagellar biosynthesis sigma factor n=1 Tax=Duganella zoogloeoides RepID=UPI000367A9C6
fliA; RNA polymerase sigma factor for flagellar operon
RNA polymerase sigma factor FliA {ECO:0000256|HAMAP-Rule:MF_00962}; RNA polymerase sigma factor for flagellar operon {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma F {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma-28 {ECO:0000256|HAMAP-Rule:MF_00962}; TaxID=1349767 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628.;"
RTP_01242018_0_2um_scaffold_1008_7
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8859..9599
DNA (741bp) protein (247aa)
Flagellar motor protein MotA n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PFD0_9BURK
Flagellar motor protein MotA {ECO:0000313|EMBL:ELX10322.1}; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. HH01.;"
motA/TolQ/ExbB proton channel family protein
RTP_01242018_0_2um_scaffold_1008_8
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9609..10367
DNA (759bp) protein (253aa)
MotB chemotaxis protein n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SZS4_JANMA
motB1; flagellar motor protein MotD
MotB chemotaxis protein {ECO:0000313|EMBL:ABR89137.1}; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
RTP_01242018_0_2um_scaffold_1008_9
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10427..12007
DNA (1581bp) protein (527aa)
Endonuclease MutS2 {ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|SAAS:SAAS00084246};; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
DNA mismatch repair protein MutS n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00035C2F11
DNA mismatch repair protein MutS domain-containing protein
RTP_01242018_0_2um_scaffold_1008_10
unknown

Not on your lists

12089..12211
DNA (123bp) protein (41aa)

This feature has no annotations

RTP_01242018_0_2um_scaffold_1008_11
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12208..13200)
DNA (993bp) protein (331aa)
Copper resistance protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WGI1_9GAMM
Copper resistance protein {ECO:0000313|EMBL:EIL98572.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
copB; copper resistance protein B
RTP_01242018_0_2um_scaffold_1008_12
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13230..14072)
DNA (843bp) protein (281aa)
Copper resitance protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WGI2_9GAMM
Copper resitance protein {ECO:0000313|EMBL:EIL98573.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
copA; copper resitance protein
RTP_01242018_0_2um_scaffold_1008_13
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14096..14821)
DNA (726bp) protein (242aa)
Copper resistance protein A 2 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HH94_ACHXA
copper resistance protein A
Copper resistance protein A 2 {ECO:0000313|EMBL:ADP19044.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
RTP_01242018_0_2um_scaffold_1008_14
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15280..16134)
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FDG9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESX64603.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
Lead, cadmium, zinc and mercury transporting ATPase
Displaying 14 items

View Taxonomy