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RTP_01242018_0_2um_scaffold_1282

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_01242018_0_2um_scaffold_1282_trna_1
unknown

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51..123
DNA (73bp)
transferRNA Thr
RTP_01242018_0_2um_scaffold_1282_1
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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309..1418
DNA (1110bp) protein (370aa)
Heat shock protein DnaJ domain-containing protein n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GFX5_NITSI
molecular chaperone DnaJ
Tax=RBG_16_Gammaproteobacteria_57_12_curated
RTP_01242018_0_2um_scaffold_1282_2
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1447..1878)
DNA (432bp) protein (144aa)
Phosphate-starvation-inducible E n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ACT5_9PROT
Phosphate-starvation-inducible E {ECO:0000313|EMBL:GAO37685.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
phosphate-starvation-inducible E
RTP_01242018_0_2um_scaffold_1282_3
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1956..2885)
DNA (930bp) protein (310aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
hydroxymethylbutenyl pyrophosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B5Y4_9PROT
RTP_01242018_0_2um_scaffold_1282_4
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2882..3322)
DNA (441bp) protein (147aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915, ECO:0000256|RuleBase:RU004231}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SHS1_THIDA
FKBP-type peptidyl-prolyl cis-trans isomerase 2
RTP_01242018_0_2um_scaffold_1282_5
Methylotenera mobilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3319..3780)
DNA (462bp) protein (154aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=583345 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540).;"
Lipoprotein signal peptidase n=1 Tax=Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540) RepID=C6WU44_METML
lspA; lipoprotein signal peptidase
RTP_01242018_0_2um_scaffold_1282_6
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3773..6553)
DNA (2781bp) protein (927aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02002}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AAI9_9PROT
RTP_01242018_0_2um_scaffold_1282_7
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6546..7487)
DNA (942bp) protein (314aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
Riboflavin biosynthesis protein RibF n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AI89_9PROT
riboflavin biosynthesis protein RibF
RTP_01242018_0_2um_scaffold_1282_8

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comp(7534..9069)
DNA (1536bp) protein (512aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QT37_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10409.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
integral membrane protein MviN
RTP_01242018_0_2um_scaffold_1282_9

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9203..9466
DNA (264bp) protein (88aa)
30S ribosomal protein S20 n=1 Tax=mine drainage metagenome RepID=E6QX70_9ZZZZ
30S ribosomal protein S20 {ECO:0000313|EMBL:CBI11844.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
30S ribosomal protein S20
RTP_01242018_0_2um_scaffold_1282_10

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comp(9554..9844)
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QUJ5_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10918.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
Displaying 11 items

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