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RTP_01242018_0_2um_Betaproteobacteria_47_58

In projects: RTP_01242018_0_2um  |  genome_canada_sulfuriferula  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: Betaproteobacteria  →  Proteobacteria  →  Bacteria

Taxonomy override: Betaproteobacteria

Displaying items 101-150 of 364 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_01242018_0_2um_scaffold_1310
Class: Betaproteobacteria (50%)
8 9769 bp 46.66 49.95 96.43
RTP_01242018_0_2um_scaffold_2207
Phylum: Proteobacteria (62.5%)
8 7698 bp 45.43 62.14 92.52
RTP_01242018_0_2um_scaffold_1366
Class: Betaproteobacteria (75%)
8 9097 bp 45.96 65.94 94.18
RTP_01242018_0_2um_scaffold_1415
Phylum: Proteobacteria (50%)
8 8620 bp 48.61 54.68 87.26
RTP_01242018_0_2um_scaffold_1692
Species: mine drainage metagenome (50%)
8 6702 bp 44.69 65.33 93.24
RTP_01242018_0_2um_scaffold_1963
Species: mine drainage metagenome (50%)
8 5521 bp 48.67 62.95 91.23
RTP_01242018_0_2um_scaffold_1709
Class: Betaproteobacteria (75%)
8 8943 bp 48.02 67.93 87.22
RTP_01242018_0_2um_scaffold_2077
Class: Betaproteobacteria (75%)
8 5155 bp 48.71 55.81 99.86
RTP_01242018_0_2um_scaffold_1759
Species: mine drainage metagenome (50%)
8 6397 bp 48.65 71.80 100.27
RTP_01242018_0_2um_scaffold_1267
Order: Burkholderiales (87.5%)
8 10260 bp 47.41 60.41 90.88
RTP_01242018_0_2um_scaffold_1536
Class: Betaproteobacteria (62.5%)
8 7669 bp 48.55 48.74 97.09
RTP_01242018_0_2um_scaffold_1797
Class: Betaproteobacteria (87.5%)
8 6173 bp 48.94 61.19 96.95
RTP_01242018_0_2um_scaffold_2464
Class: Betaproteobacteria (71.43%)
7 4129 bp 47.66 48.64 94.82
RTP_01242018_0_2um_scaffold_3322
Phylum: Proteobacteria (71.43%)
7 2983 bp 43.31 62.00 92.02
RTP_01242018_0_2um_scaffold_3074
Phylum: Proteobacteria (71.43%)
7 5451 bp 44.40 55.45 72.54
RTP_01242018_0_2um_scaffold_1418
Class: Betaproteobacteria (85.71%)
7 8572 bp 51.28 59.44 87.28
RTP_01242018_0_2um_scaffold_2528
Species: mine drainage metagenome (100%)
7 4000 bp 47.23 68.55 100.05
RTP_01242018_0_2um_scaffold_1166
Order: Hydrogenophilales (57.14%)
7 11478 bp 50.64 62.79 96.24
RTP_01242018_0_2um_scaffold_2533
Species: mine drainage metagenome (71.43%)
7 6963 bp 48.00 55.19 90.52
RTP_01242018_0_2um_scaffold_5090
Phylum: Proteobacteria (57.14%)
7 3906 bp 43.57 66.55 69.59
RTP_01242018_0_2um_scaffold_3903 7 5970 bp 47.40 58.52 84.49
RTP_01242018_0_2um_scaffold_1710
Species: mine drainage metagenome (71.43%)
7 6609 bp 45.18 70.13 96.01
RTP_01242018_0_2um_scaffold_2312
Class: Betaproteobacteria (57.14%)
7 4477 bp 49.81 60.91 92.34
RTP_01242018_0_2um_scaffold_2313
Class: Betaproteobacteria (57.14%)
7 5075 bp 48.20 65.29 91.51
RTP_01242018_0_2um_scaffold_2058
Order: Hydrogenophilales (57.14%)
7 5233 bp 47.30 47.67 91.44
RTP_01242018_0_2um_scaffold_1478
Species: mine drainage metagenome (57.14%)
7 8146 bp 47.24 55.96 95.38
RTP_01242018_0_2um_scaffold_2608
Class: Betaproteobacteria (57.14%)
7 3849 bp 47.65 74.28 73.81
RTP_01242018_0_2um_scaffold_2609
Class: Betaproteobacteria (71.43%)
7 6290 bp 51.34 70.14 86.52
RTP_01242018_0_2um_scaffold_2647
Phylum: Proteobacteria (100%)
7 4832 bp 50.46 57.74 95.36
RTP_01242018_0_2um_scaffold_2403
Phylum: Proteobacteria (66.67%)
6 4249 bp 46.72 43.81 75.19
RTP_01242018_0_2um_scaffold_4065 6 2442 bp 40.50 51.54 76.78
RTP_01242018_0_2um_scaffold_1298
Class: Betaproteobacteria (100%)
6 9873 bp 45.69 65.06 96.26
RTP_01242018_0_2um_scaffold_2190
Class: Betaproteobacteria (83.33%)
6 4832 bp 48.14 59.70 90.71
RTP_01242018_0_2um_scaffold_1605
Class: Betaproteobacteria (66.67%)
6 7185 bp 48.48 59.56 94.99
RTP_01242018_0_2um_scaffold_2457
Class: Betaproteobacteria (66.67%)
6 4137 bp 48.15 61.82 97.32
RTP_01242018_0_2um_scaffold_2203 6 4807 bp 51.18 39.50 58.04
RTP_01242018_0_2um_scaffold_2728
Class: Betaproteobacteria (83.33%)
6 3645 bp 50.32 52.76 97.45
RTP_01242018_0_2um_scaffold_2496
Genus: Herbaspirillum (50%)
6 4075 bp 48.93 55.33 86.36
RTP_01242018_0_2um_scaffold_2019
Class: Betaproteobacteria (83.33%)
6 5339 bp 47.35 56.47 92.71
RTP_01242018_0_2um_scaffold_1948
Species: mine drainage metagenome (83.33%)
6 5581 bp 48.32 65.36 97.19
RTP_01242018_0_2um_scaffold_3412
Class: Betaproteobacteria (66.67%)
6 4623 bp 47.72 57.20 79.56
RTP_01242018_0_2um_scaffold_1746
Class: Betaproteobacteria (50%)
6 7199 bp 49.31 54.88 91.64
RTP_01242018_0_2um_scaffold_2122 6 4986 bp 49.94 55.48 93.68
RTP_01242018_0_2um_scaffold_2642
Class: Betaproteobacteria (50%)
6 5551 bp 49.40 61.02 93.71
RTP_01242018_0_2um_scaffold_3228
Genus: Janthinobacterium (50%)
6 3068 bp 45.66 47.18 91.13
RTP_01242018_0_2um_scaffold_3492
Class: Betaproteobacteria (60%)
5 2831 bp 42.32 60.83 66.02
RTP_01242018_0_2um_scaffold_2148
Phylum: Proteobacteria (60%)
5 4936 bp 48.06 57.01 88.61
RTP_01242018_0_2um_scaffold_2932
Order: Hydrogenophilales (60%)
5 4286 bp 46.41 59.71 98.90
RTP_01242018_0_2um_scaffold_3521
Class: Betaproteobacteria (60%)
5 2801 bp 50.45 60.25 94.04
RTP_01242018_0_2um_scaffold_3523
Genus: Sulfuricella (60%)
5 2801 bp 44.52 58.32 95.75
Displaying items 101-150 of 364 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.