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RTP_01242018_0_2um_Betaproteobacteria_47_58

In projects: RTP_01242018_0_2um  |  genome_canada_sulfuriferula  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: Betaproteobacteria  →  Proteobacteria  →  Bacteria

Taxonomy override: Betaproteobacteria

Displaying items 101-150 of 364 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_01242018_0_2um_scaffold_7654
Class: Betaproteobacteria (100%)
3 1495 bp 44.35 49.46 79.06
RTP_01242018_0_2um_scaffold_3672
Species: mine drainage metagenome (50%)
4 3974 bp 47.79 49.71 81.15
RTP_01242018_0_2um_scaffold_8476
Species: Methyloversatilis universalis (50%)
2 1397 bp 49.75 49.93 91.05
RTP_01242018_0_2um_scaffold_1310
Class: Betaproteobacteria (50%)
8 9769 bp 46.66 49.95 96.43
RTP_01242018_0_2um_scaffold_13124
Species: mine drainage metagenome (100%)
1 1077 bp 46.89 50.00 99.72
RTP_01242018_0_2um_scaffold_2443
Species: mine drainage metagenome (60%)
5 4164 bp 47.07 50.00 98.56
RTP_01242018_0_2um_scaffold_7332
Class: Betaproteobacteria (50%)
4 1538 bp 45.71 50.03 75.16
RTP_01242018_0_2um_scaffold_4128
Class: Betaproteobacteria (60%)
5 2409 bp 49.11 50.19 86.80
RTP_01242018_0_2um_scaffold_3014
Species: mine drainage metagenome (66.67%)
3 3240 bp 48.55 50.32 97.13
RTP_01242018_0_2um_scaffold_3360
Species: Sulfuricella denitrificans (66.67%)
3 4367 bp 47.61 50.35 67.12
RTP_01242018_0_2um_scaffold_3971
Order: Gallionellales (50%)
4 2492 bp 44.50 50.38 97.15
RTP_01242018_0_2um_scaffold_2107
Species: mine drainage metagenome (50%)
4 5051 bp 48.90 50.54 99.78
RTP_01242018_0_2um_scaffold_1645
Order: Hydrogenophilales (66.67%)
3 6977 bp 46.18 50.65 94.77
RTP_01242018_0_2um_scaffold_3293
Class: Betaproteobacteria (66.67%)
3 3014 bp 47.21 51.01 88.69
RTP_01242018_0_2um_scaffold_7229
Species: mine drainage metagenome (66.67%)
3 1553 bp 50.42 51.09 95.24
RTP_01242018_0_2um_scaffold_14087
Species: mine drainage metagenome (100%)
1 1032 bp 49.61 51.16 99.71
RTP_01242018_0_2um_scaffold_3215
Class: Betaproteobacteria (60%)
5 3076 bp 47.85 51.20 90.80
RTP_01242018_0_2um_scaffold_5635
Species: mine drainage metagenome (50%)
2 1848 bp 49.35 51.22 100.00
RTP_01242018_0_2um_scaffold_3700
Species: mine drainage metagenome (50%)
4 2656 bp 47.18 51.51 89.46
RTP_01242018_0_2um_scaffold_2785
Order: Hydrogenophilales (50%)
4 3549 bp 49.03 51.52 100.25
RTP_01242018_0_2um_scaffold_4065 6 2442 bp 40.50 51.54 76.78
RTP_01242018_0_2um_scaffold_2320
Species: mine drainage metagenome (80%)
5 4459 bp 46.18 51.67 91.77
RTP_01242018_0_2um_scaffold_13768
Species: RBG_16_Betaproteobacteria_58_11_curated (50%)
2 1046 bp 48.95 51.77 92.35
RTP_01242018_0_2um_scaffold_9753
Species: Gallionella capsiferriformans (100%)
1 1282 bp 48.67 51.83 99.92
RTP_01242018_0_2um_scaffold_3846
Species: CG_Beta_01 (50%)
4 2555 bp 48.92 51.84 94.76
RTP_01242018_0_2um_scaffold_632
Domain: Bacteria (77.27%)
22 25627 bp 42.67 52.07 85.69
RTP_01242018_0_2um_scaffold_1467
Class: Betaproteobacteria (56.25%)
16 12238 bp 51.30 52.19 97.42
RTP_01242018_0_2um_scaffold_3002
Species: mine drainage metagenome (50%)
4 3252 bp 47.76 52.26 88.47
RTP_01242018_0_2um_scaffold_2011
Phylum: Proteobacteria (58.82%)
17 13401 bp 49.62 52.27 78.26
RTP_01242018_0_2um_scaffold_1077
Order: Hydrogenophilales (52.63%)
19 18595 bp 45.47 52.49 95.27
RTP_01242018_0_2um_scaffold_2728
Class: Betaproteobacteria (83.33%)
6 3645 bp 50.32 52.76 97.45
RTP_01242018_0_2um_scaffold_13563
Class: Betaproteobacteria (100%)
3 1056 bp 46.31 52.84 94.89
RTP_01242018_0_2um_scaffold_1462
Phylum: Proteobacteria (55.56%)
9 8264 bp 49.24 52.95 94.39
RTP_01242018_0_2um_scaffold_1054
Class: Betaproteobacteria (50%)
12 13354 bp 49.22 53.05 94.87
RTP_01242018_0_2um_scaffold_6470 3 1674 bp 49.16 53.05 17.20
RTP_01242018_0_2um_scaffold_6683 1 1631 bp 44.57 53.07 46.35
RTP_01242018_0_2um_scaffold_9478 3 1305 bp 41.76 53.22 71.26
RTP_01242018_0_2um_scaffold_9824 2 1277 bp 50.67 53.33 6.11
RTP_01242018_0_2um_scaffold_590
Class: Betaproteobacteria (100%)
23 27656 bp 45.56 53.34 95.21
RTP_01242018_0_2um_scaffold_5892
Species: Cupriavidus basilensis (50%)
2 1788 bp 47.04 53.61 78.52
RTP_01242018_0_2um_scaffold_3141
Class: Betaproteobacteria (80%)
5 3141 bp 49.47 53.77 92.65
RTP_01242018_0_2um_scaffold_3359
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 2946 bp 48.51 53.87 99.90
RTP_01242018_0_2um_scaffold_3191
Species: mine drainage metagenome (60%)
5 3097 bp 48.63 53.91 99.10
RTP_01242018_0_2um_scaffold_5196
Species: GWA2_Gallionellales_60_18_curated (50%)
2 1988 bp 45.37 54.02 97.48
RTP_01242018_0_2um_scaffold_4608
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 2187 bp 46.14 54.12 94.51
RTP_01242018_0_2um_scaffold_12067
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1133 bp 48.81 54.15 88.97
RTP_01242018_0_2um_scaffold_1189
Species: mine drainage metagenome (72.73%)
11 11176 bp 47.35 54.32 90.81
RTP_01242018_0_2um_scaffold_7854
Order: Burkholderiales (60%)
5 1466 bp 51.02 54.33 78.79
RTP_01242018_0_2um_scaffold_1570
Species: mine drainage metagenome (80%)
10 7452 bp 46.77 54.43 96.30
RTP_01242018_0_2um_scaffold_1415
Phylum: Proteobacteria (50%)
8 8620 bp 48.61 54.68 87.26
Displaying items 101-150 of 364 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.