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RTP_01242018_0_2um_Betaproteobacteria_47_58

In projects: RTP_01242018_0_2um  |  genome_canada_sulfuriferula  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: Betaproteobacteria  →  Proteobacteria  →  Bacteria

Taxonomy override: Betaproteobacteria

Displaying items 151-200 of 364 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_01242018_0_2um_scaffold_1715 3 6581 bp 48.75 54.68 88.76
RTP_01242018_0_2um_scaffold_1454
Phylum: Proteobacteria (55.56%)
9 8305 bp 42.16 54.74 88.61
RTP_01242018_0_2um_scaffold_1520
Species: mine drainage metagenome (55.56%)
9 7812 bp 49.30 54.86 87.49
RTP_01242018_0_2um_scaffold_1746
Class: Betaproteobacteria (50%)
6 7199 bp 49.31 54.88 91.64
RTP_01242018_0_2um_scaffold_2815
Order: Burkholderiales (60%)
5 3511 bp 47.56 54.94 97.07
RTP_01242018_0_2um_scaffold_1995
Class: Betaproteobacteria (100%)
3 5416 bp 49.24 55.03 98.98
RTP_01242018_0_2um_scaffold_3730
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
4 3221 bp 45.11 55.05 86.81
RTP_01242018_0_2um_scaffold_1148
Species: Collimonas fungivorans (54.55%)
11 11652 bp 46.34 55.06 95.57
RTP_01242018_0_2um_scaffold_1760
Class: Betaproteobacteria (54.55%)
11 11262 bp 48.59 55.10 93.63
RTP_01242018_0_2um_scaffold_2579
Species: mine drainage metagenome (100%)
3 3897 bp 47.45 55.12 92.38
RTP_01242018_0_2um_scaffold_2533
Species: mine drainage metagenome (71.43%)
7 6963 bp 48.00 55.19 90.52
RTP_01242018_0_2um_scaffold_2904
Species: mine drainage metagenome (60%)
5 3377 bp 45.10 55.21 81.82
RTP_01242018_0_2um_scaffold_2496
Genus: Herbaspirillum (50%)
6 4075 bp 48.93 55.33 86.36
RTP_01242018_0_2um_scaffold_1931
Class: Betaproteobacteria (60%)
5 5661 bp 46.16 55.35 94.12
RTP_01242018_0_2um_scaffold_3074
Phylum: Proteobacteria (71.43%)
7 5451 bp 44.40 55.45 72.54
RTP_01242018_0_2um_scaffold_5665
Class: Betaproteobacteria (100%)
3 1842 bp 47.72 55.46 90.23
RTP_01242018_0_2um_scaffold_2122 6 4986 bp 49.94 55.48 93.68
RTP_01242018_0_2um_scaffold_2996
Species: mine drainage metagenome (80%)
5 3255 bp 47.28 55.53 97.42
RTP_01242018_0_2um_scaffold_1883
Class: Betaproteobacteria (60%)
5 5878 bp 46.48 55.55 93.76
RTP_01242018_0_2um_scaffold_1539
Class: Betaproteobacteria (54.55%)
11 7653 bp 46.82 55.57 93.92
RTP_01242018_0_2um_scaffold_7760
Species: Methylovorus glucosotrophus (100%)
2 1479 bp 45.98 55.58 92.90
RTP_01242018_0_2um_scaffold_8672
Species: mine drainage metagenome (50%)
2 1375 bp 47.78 55.64 85.09
RTP_01242018_0_2um_scaffold_993
Phylum: Proteobacteria (57.14%)
14 14390 bp 50.20 55.73 94.21
RTP_01242018_0_2um_scaffold_2656
Class: Betaproteobacteria (63.64%)
11 7091 bp 46.95 55.76 84.66
RTP_01242018_0_2um_scaffold_2077
Class: Betaproteobacteria (75%)
8 5155 bp 48.71 55.81 99.86
RTP_01242018_0_2um_scaffold_8560
Species: CG_Beta_01 (50%)
2 1389 bp 44.42 55.83 93.95
RTP_01242018_0_2um_scaffold_1478
Species: mine drainage metagenome (57.14%)
7 8146 bp 47.24 55.96 95.38
RTP_01242018_0_2um_scaffold_2831
Class: Betaproteobacteria (75%)
4 3490 bp 46.33 56.00 93.27
RTP_01242018_0_2um_scaffold_3183
Class: Betaproteobacteria (66.67%)
3 3104 bp 45.59 56.01 88.92
RTP_01242018_0_2um_scaffold_611
Order: Methylophilales (67.86%)
28 26517 bp 41.48 56.19 86.47
RTP_01242018_0_2um_scaffold_2439
Species: mine drainage metagenome (80%)
5 4169 bp 47.16 56.20 96.93
RTP_01242018_0_2um_scaffold_2672
Phylum: Proteobacteria (72.73%)
11 6410 bp 46.80 56.21 58.03
RTP_01242018_0_2um_scaffold_3512
Class: Betaproteobacteria (100%)
4 2810 bp 43.42 56.21 94.80
RTP_01242018_0_2um_scaffold_901
Class: Betaproteobacteria (66.67%)
24 23887 bp 47.13 56.27 95.71
RTP_01242018_0_2um_scaffold_7770
Species: Sulfuricella denitrificans (50%)
2 1477 bp 45.50 56.36 93.64
RTP_01242018_0_2um_scaffold_2019
Class: Betaproteobacteria (83.33%)
6 5339 bp 47.35 56.47 92.71
RTP_01242018_0_2um_scaffold_1124 19 15214 bp 48.00 56.61 89.74
RTP_01242018_0_2um_scaffold_1341
Phylum: Proteobacteria (54.55%)
11 9318 bp 46.09 56.70 92.85
RTP_01242018_0_2um_scaffold_2521
Species: RBG_16_Betaproteobacteria_58_11_curated (50%)
4 4019 bp 47.72 56.73 99.28
RTP_01242018_0_2um_scaffold_3131
Class: Betaproteobacteria (75%)
4 3150 bp 48.89 56.86 95.05
RTP_01242018_0_2um_scaffold_9700
Species: Betaproteobacteria bacterium MOLA814 (50%)
2 1287 bp 48.80 56.99 27.74
RTP_01242018_0_2um_scaffold_2148
Phylum: Proteobacteria (60%)
5 4936 bp 48.06 57.01 88.61
RTP_01242018_0_2um_scaffold_2095
Species: mine drainage metagenome (66.67%)
9 5672 bp 49.47 57.15 96.74
RTP_01242018_0_2um_scaffold_3412
Class: Betaproteobacteria (66.67%)
6 4623 bp 47.72 57.20 79.56
RTP_01242018_0_2um_scaffold_732
Class: Betaproteobacteria (80%)
20 21003 bp 50.05 57.24 93.94
RTP_01242018_0_2um_scaffold_2566
Order: Burkholderiales (60%)
5 5201 bp 49.16 57.28 97.37
RTP_01242018_0_2um_scaffold_11494
Species: Oxalobacteraceae bacterium IMCC9480 (50%)
2 1165 bp 46.44 57.30 96.82
RTP_01242018_0_2um_scaffold_1281
Class: Betaproteobacteria (76.92%)
13 10028 bp 45.87 57.44 93.91
RTP_01242018_0_2um_scaffold_1036
Phylum: Proteobacteria (57.89%)
19 18824 bp 46.88 57.45 95.40
RTP_01242018_0_2um_scaffold_1902
Phylum: Proteobacteria (66.67%)
12 11231 bp 48.42 57.46 85.24
Displaying items 151-200 of 364 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.