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RTP_01242018_0_2um_scaffold_1036

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_01242018_0_2um_scaffold_1036_1

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comp(3..2552)
DNA (2550bp) protein (850aa)
DNA polymerase I (POL I) {ECO:0000313|EMBL:CBI09652.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CBI09652.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
DNA polymerase I (EC:2.7.7.7)
DNA polymerase I (POL I) n=1 Tax=mine drainage metagenome RepID=E6QQY1_9ZZZZ
RTP_01242018_0_2um_scaffold_1036_2

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2563..3291
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QQY2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI09653.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_01242018_0_2um_scaffold_1036_3
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

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3355..3684
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBJ7_NITMU
hypothetical protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
RTP_01242018_0_2um_scaffold_1036_4

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3734..4699
DNA (966bp) protein (322aa)
Homoserine kinase (HSK) (HK) {ECO:0000313|EMBL:CBI09655.1}; EC=2.7.1.39 {ECO:0000313|EMBL:CBI09655.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
homoserine kinase (EC:2.7.1.39)
Homoserine kinase (HSK) (HK) n=1 Tax=mine drainage metagenome RepID=E6QQY4_9ZZZZ
RTP_01242018_0_2um_scaffold_1036_5

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4696..5430
DNA (735bp) protein (245aa)
Putative transmembrane protein n=1 Tax=mine drainage metagenome RepID=E6QQY5_9ZZZZ
Putative transmembrane protein {ECO:0000313|EMBL:CBI09656.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_01242018_0_2um_scaffold_1036_6
unknown

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comp(5475..5801)
DNA (327bp) protein (109aa)

This feature has no annotations

RTP_01242018_0_2um_scaffold_1036_7
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5898..7994
DNA (2097bp) protein (699aa)
CheA signal transduction histidine kinase n=1 Tax=Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540) RepID=C6WXT9_METML
CheA signal transduction histidine kinase
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
RTP_01242018_0_2um_scaffold_1036_8
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8006..8377
DNA (372bp) protein (124aa)
Response regulator receiver protein n=1 Tax=Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540) RepID=C6WXU0_METML
Response regulator receiver {ECO:0000313|EMBL:EYR66347.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
response regulator receiver protein
RTP_01242018_0_2um_scaffold_1036_9
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8379..8846
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540) RepID=C6WXU1_METML
Uncharacterized protein {ECO:0000313|EMBL:EYR66348.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
hypothetical protein
RTP_01242018_0_2um_scaffold_1036_10
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(8860..10059)
DNA (1200bp) protein (400aa)
Major facilitator superfamily transporter n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D6W4_BRAJP
MFS transporter
Tax=GWC2_Geobacteraceae_53_11_curated
RTP_01242018_0_2um_scaffold_1036_11
unknown

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10122..10409
DNA (288bp) protein (96aa)

This feature has no annotations

RTP_01242018_0_2um_scaffold_1036_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10458..10832)
DNA (375bp) protein (125aa)
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 id=12493275 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rplS; 50S ribosomal protein L19
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_01242018_0_2um_scaffold_1036_13
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10928..11686)
DNA (759bp) protein (253aa)
tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Methylovorus sp. (strain SIP3-4) RepID=C6XA88_METSD
RTP_01242018_0_2um_scaffold_1036_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11686..12165)
DNA (480bp) protein (160aa)
Ribosome maturation factor RimM n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=RIMM_THIDA
16S rRNA-processing protein RimM
Ribosome maturation factor RimM {ECO:0000255|HAMAP-Rule:MF_00014}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_01242018_0_2um_scaffold_1036_15
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12176..12430)
DNA (255bp) protein (85aa)
30S ribosomal protein S16 n=1 Tax=Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) RepID=I3UBN8_ADVKW
SSU ribosomal protein S16p
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
RTP_01242018_0_2um_scaffold_1036_16
R_Methylotenera_45_14, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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12600..13400
DNA (801bp) protein (267aa)
Methionine aminopeptidase (MAP) (Peptidase M) n=1 Tax=mine drainage metagenome RepID=E6QRA2_9ZZZZ
methionine aminopeptidase
Tax=RIFCSPLOWO2_02_FULL_Methylotenera_45_14_curated
RTP_01242018_0_2um_scaffold_1036_17

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13591..15912
DNA (2322bp) protein (774aa)
(Protein-PII) uridylyltransferase (PII uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) {ECO:0000313|EMBL:CBI09775.1}; EC=2.7.7.59 {ECO:0000313|EMBL:CBI09775.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
(Protein-PII) uridylyltransferase (PII uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) n=1 Tax=mine drainage metagenome RepID=E6QRA3_9ZZZZ
PII uridylyl-transferase
RTP_01242018_0_2um_scaffold_1036_18

Not on your lists

comp(15909..16811)
DNA (903bp) protein (301aa)
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000313|EMBL:CBI09783.1}; EC=2.7.7.9 {ECO:0000313|EMBL:CBI09783.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
UTP--glucose-1-phosphate uridylyltransferase (EC:2.7.7.9)
UTP--glucose-1-phosphate uridylyltransferase n=1 Tax=mine drainage metagenome RepID=E6QRB1_9ZZZZ
RTP_01242018_0_2um_scaffold_1036_19
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16823..18823)
DNA (2001bp) protein (667aa)
ligA; DNA ligase (EC:6.5.1.2)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
DNA ligase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B4E4_9PROT
Displaying 19 items

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