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RTP_02272018_0_2um_scaffold_238

Search features with annotation key words

Displaying items 1-30 of 100 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_238_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..545
DNA (543bp) protein (181aa)
Putative uncharacterized protein id=1316209 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_238_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

539..1444
DNA (906bp) protein (302aa)
ABC transporter ATP-binding protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003813636
ABC-2 type transporter ATPase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_238_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1437..2222
DNA (786bp) protein (262aa)
ABC-2 type transporter, NodJ; K09694 lipooligosaccharide transport system permease protein id=12494176 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
ABC-2 type transporter, NodJ
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_238_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2383..3351
DNA (969bp) protein (323aa)
Putative uncharacterized protein id=1316206 bin=GWE1_T_denit_62_9 species=Mycobacterium fortuitum genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
DNA polymerase III
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_238_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3354..4280)
DNA (927bp) protein (309aa)
lipoyl synthase n=1 Tax=Thiobacillus thioparus RepID=UPI0003619D89
lipoyl synthase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_238_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4319..4873
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037AF101
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_238_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4866..5411
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003782B8A
thioredoxin family protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_238_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5412..5720)
DNA (309bp) protein (103aa)
dioxygenase n=1 Tax=Thiobacillus thioparus RepID=UPI00037AE749
dioxygenase ferredoxin subunit
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_238_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5722..6837)
DNA (1116bp) protein (372aa)
anthranilate phosphoribosyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI000361F7BF
anthranilate phosphoribosyltransferase-like protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_238_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6887..7510)
DNA (624bp) protein (208aa)
lipoate-protein ligase B; K03801 lipoyl(octanoyl) transferase [EC:2.3.1.181] id=12494172 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
lipoate-protein ligase B
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_238_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7539..7817)
DNA (279bp) protein (93aa)
UPF0250 protein Tbd_0268 id=1362416 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_238_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7950..8813)
DNA (864bp) protein (288aa)
D-alanine transminase (EC:2.6.1.21)
cytochrome C550 n=1 Tax=Thiobacillus denitrificans RepID=UPI000382CF4D
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_238_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8810..9925)
DNA (1116bp) protein (372aa)
serine-type D-ala-D-ala carboxypeptidase (EC:3.4.16.4)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036336E8
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_238_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9922..10767)
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003687C9B
rare lipoprotein A
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_238_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10785..11885)
DNA (1101bp) protein (367aa)
cell wall shape-determining protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036E4145
rod shape-determining protein RodA
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_238_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11872..13764)
DNA (1893bp) protein (631aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129)
penicillin-binding protein 2 n=1 Tax=Thiobacillus thioparus RepID=UPI000368587B
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_238_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13761..14261)
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037275D8
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_238_18
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14258..15148)
DNA (891bp) protein (297aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003734A71
rod shape-determining protein MreC
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_238_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15183..16226)
DNA (1044bp) protein (348aa)
rod shape-determining protein MreB n=1 Tax=Thiobacillus thioparus RepID=UPI0003655A13
rod shape-determining protein MreB
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_238_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16329..16616
DNA (288bp) protein (96aa)
aspartyl/glutamyl-tRNA amidotransferase subunit C (EC:6.3.5.-)
glutamyl-tRNA amidotransferase subunit C n=1 Tax=Thiobacillus thioparus RepID=UPI00037C27B8
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_238_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16620..18077
DNA (1458bp) protein (486aa)
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-)
glutamyl-tRNA amidotransferase subunit A n=1 Tax=Thiobacillus thioparus RepID=UPI000378AF1C
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_238_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18074..19519
DNA (1446bp) protein (482aa)
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B (EC:6.3.5.-)
glutamyl-tRNA amidotransferase subunit B n=1 Tax=Thiobacillus thioparus RepID=UPI00036ADEE5
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_238_23
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19855..20499)
DNA (645bp) protein (215aa)
Putative uncharacterized protein id=1355127 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RBG_16_Gallionellales_57_15_curated
RTP_02272018_0_2um_scaffold_238_24
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20438..21076)
DNA (639bp) protein (213aa)
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase id=1355128 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_238_25
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21103..21912
DNA (810bp) protein (270aa)
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18)
DNA-(Apurinic or apyrimidinic site) lyase id=1355129 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RBG_16_Gallionellales_57_15_curated
RTP_02272018_0_2um_scaffold_238_26
Acidithiobacillus sp. GGI-221, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21970..22863
DNA (894bp) protein (298aa)
DNA-damage-inducible protein D n=1 Tax=Acidithiobacillus sp. GGI-221 RepID=F8XLH8_9GAMM
DNA-damage-inducible protein D {ECO:0000313|EMBL:EGQ60571.1}; TaxID=872330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus sp. GGI-221.;"
dinD; DNA-damage-inducible protein D
RTP_02272018_0_2um_scaffold_238_27
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22869..25676
DNA (2808bp) protein (936aa)
DNA methyltransferase id=4744892 bin=GWC2_Geobacteraceae_55_20 species=Nitrosomonas sp. AL212 genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
DNA methyltransferase
Tax=BJP_IG2102_Gammaproteobacteria_62_140
RTP_02272018_0_2um_scaffold_238_28
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25669..26013)
DNA (345bp) protein (115aa)
hypothetical protein id=12497360 bin=THIO_MID species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
RTP_02272018_0_2um_scaffold_238_29
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26057..26761)
DNA (705bp) protein (235aa)
hypothetical protein id=12497359 bin=THIO_MID species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RBG_16_Gallionellales_57_15_curated
RTP_02272018_0_2um_scaffold_238_30
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26789..27064)
DNA (276bp) protein (92aa)
RelE/StbE family addiction module toxin id=12497287 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
RelE/StbE family addiction module toxin
Tax=RBG_16_Gallionellales_57_15_curated
Displaying items 1-30 of 100 in total

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