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RTP_02272018_0_2um_scaffold_542

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_542_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..4423)
DNA (4422bp) protein (1474aa)
CheA Signal Transduction Histidine Kinases (STHK) id=1328058 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
signal transduction histidine kinase CheA-like protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_542_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4493..6613)
DNA (2121bp) protein (707aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003690CBB
chemotaxis sensory transducer
Chemotaxis sensory transducer {ECO:0000313|EMBL:AAZ98502.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_542_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6667..7188)
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037400FD
chemotaxis protein CheW
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_542_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7199..7564)
DNA (366bp) protein (122aa)
Response regulator receiver domain protein (CheY) id=1346777 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
response regulator receiver domain-containing protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_542_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7568..8056)
DNA (489bp) protein (163aa)
response regulator receiver domain-containing protein; K02657 twitching motility two-component system response regulator PilG id=12495277 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
response regulator receiver domain-containing protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_542_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8165..9067)
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000377720B
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_542_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9467..10309
DNA (843bp) protein (281aa)
Phosphomethylpyrimidine kinase id=1346773 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
phosphomethylpyrimidine kinase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_542_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10325..10960
DNA (636bp) protein (212aa)
thiamine monophosphate synthase (EC:2.5.1.3)
thiamine-phosphate pyrophosphorylase n=1 Tax=Thiobacillus thioparus RepID=UPI00037D2BB3
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_542_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10971..12248
DNA (1278bp) protein (426aa)
glutamate-1-semialdehyde aminotransferase (EC:5.4.3.8)
glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003783F31
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_542_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12245..13309
DNA (1065bp) protein (355aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037E9F0D
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_542_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13456..14535
DNA (1080bp) protein (360aa)
Predicted Transglutaminase-like enzymes,putative cysteine proteases n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P3M6_AROAE
transglutaminase-like enzyme, cysteine protease
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_542_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14563..16863)
DNA (2301bp) protein (767aa)
thiol:disulfide interchange protein DsbD (EC:1.8.1.8)
thiol:disulfide interchange protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036533EC
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_542_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16856..17179)
DNA (324bp) protein (108aa)
Divalent cation tolerance protein id=1343288 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
divalent cation tolerance protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_542_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17183..17590
DNA (408bp) protein (136aa)
FxsA protein id=1343289 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
FxsA protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_542_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17597..18484)
DNA (888bp) protein (296aa)
Putative oxidoreductase protein id=1343290 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
oxidoreductase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_542_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18580..19611
DNA (1032bp) protein (344aa)
ferredoxin n=1 Tax=Thiobacillus thioparus RepID=UPI00036059E7
CDP-6-deoxy-delta-3,4-glucoseen reductase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_542_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19670..20185)
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036EF080
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_542_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20294..21469)
DNA (1176bp) protein (392aa)
Putative uncharacterized protein id=1343293 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
porphyrin biosynthesis protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_542_19
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21469..22536)
DNA (1068bp) protein (356aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003619946
uroporphyrin-III C-methyltransferase
Uroporphyrin-III C-methyltransferase {ECO:0000313|EMBL:AAZ98519.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_542_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22533..23300)
DNA (768bp) protein (256aa)
uroporphyrinogen-III synthase (EC:4.2.1.75)
Uroporphyrinogen-III synthase id=1343295 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_542_21
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23297..24220)
DNA (924bp) protein (308aa)
porphobilinogen deaminase (EC:2.5.1.61)
Porphobilinogen deaminase {ECO:0000255|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000255|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000255|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000255|HAMAP-Rule:MF_00260}; Short=HMBS {ECO:0000255|HAMAP-Rule:MF_00260};; Pre-uroporphyrinogen synthase {ECO:0000255|HAMAP-Rule:MF_00260}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
porphobilinogen deaminase n=1 Tax=Thiobacillus thioparus RepID=UPI00036D392C
RTP_02272018_0_2um_scaffold_542_22
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24314..24796
DNA (483bp) protein (161aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SFT4_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98522.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_542_23
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24936..25571
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000367D577
LuxR family transcriptional regulator
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_542_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25578..27494
DNA (1917bp) protein (639aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035F7AD2
periplasmic sensor hybrid histidine kinase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_542_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27548..28963
DNA (1416bp) protein (472aa)
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase n=1 Tax=Thiobacillus thioparus RepID=UPI0003743589
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_542_26
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29381..29998
DNA (618bp) protein (206aa)
Putative uncharacterized protein n=1 Tax=Burkholderia sp. YI23 RepID=G8MD08_9BURK
NAD-dependent DNA ligase {ECO:0000313|EMBL:KDR40825.1}; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glathei.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_542_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30477..31034
DNA (558bp) protein (186aa)
esterase; K07000 id=12496307 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
esterase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_542_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31041..32909
DNA (1869bp) protein (623aa)
ribonuclease II n=1 Tax=Thiobacillus thioparus RepID=UPI00037534DA
ribonuclease II
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_542_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33159..33956
DNA (798bp) protein (266aa)
TonB-like protein id=1357139 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
TonB-like protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_542_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34230..35243
DNA (1014bp) protein (338aa)
cbbF; fructose-1,6-bisphosphatase (EC:3.1.3.11)
Fructose-1,6-bisphosphatase class 1 id=1357140 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 43 in total

View Taxonomy