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RTP_02272018_0_2um_scaffold_642

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_642_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..512
DNA (510bp) protein (170aa)
Chemotaxis sensory transducer n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SIF6_THIDA
methyl-accepting chemotaxis sensory transducer
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_642_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

636..1823
DNA (1188bp) protein (396aa)
Chemotaxis sensory transducer n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SIF6_THIDA
chemotaxis sensory transducer
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_642_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2036..3700
DNA (1665bp) protein (555aa)
Chemotaxis sensory transducer id=1317110 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
chemotaxis sensory transducer
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_642_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3858..4727
DNA (870bp) protein (290aa)
chemotaxis protein CheR (EC:2.1.1.80)
chemotaxis protein CheR n=1 Tax=Thiobacillus thioparus RepID=UPI00035EDFF8
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_642_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4724..5332
DNA (609bp) protein (203aa)
chemotaxis protein CheD n=1 Tax=Thiobacillus denitrificans RepID=UPI0003753F35
chemoreceptor glutamine deamidase CheD
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_642_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5368..6435
DNA (1068bp) protein (356aa)
chemotaxis-specific methylesterase (EC:3.1.1.61)
Chemotaxis response regulator protein-glutamate methylesterase {ECO:0000255|HAMAP-Rule:MF_00099}; EC=3.1.1.61 {ECO:0000255|HAMAP-Rule:MF_00099};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Chemotaxis response regulator protein-glutamate methylesterase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=CHEB_THIDA
RTP_02272018_0_2um_scaffold_642_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6538..6780
DNA (243bp) protein (81aa)
chemotaxis protein CheY n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C5637
response regulator receiver protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_642_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6863..7459
DNA (597bp) protein (199aa)
chemotaxis protein CheZ n=1 Tax=Thiobacillus thioparus RepID=UPI00037E7DDA
chemotaxis regulator CheZ
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_642_9
unknown

Not on your lists

7517..7885
DNA (369bp) protein (123aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_642_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7836..8630)
DNA (795bp) protein (265aa)
flagellar biosynthesis protein FliR n=1 Tax=Thiobacillus denitrificans RepID=UPI00037294F7
flagellar biosynthesis protein FliR
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_642_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8752..9021)
DNA (270bp) protein (90aa)
Flagellar biosynthesis protein FliQ id=1317103 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
flagellar biosynthesis protein FliQ
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_642_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9361..10122)
DNA (762bp) protein (254aa)
Flagellar transport protein FliP id=1317102 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
fliP; flagellar biosynthesis protein FliP
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_642_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10112..10537)
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036514BA
flagellar biogenesis protein FliO
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_642_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10534..10938)
DNA (405bp) protein (135aa)
Flagellar motor switch/type III secretory pathway protein FliN n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SIG7_THIDA
flagellar motor switch/type III secretory pathway protein FliN
Flagellar motor switch/type III secretory pathway protein FliN {ECO:0000313|EMBL:AAZ97561.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_642_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10931..11935)
DNA (1005bp) protein (335aa)
flagellar motor switch protein FliM n=1 Tax=Thiobacillus thioparus RepID=UPI0003720113
fliM; flagellar motor switch protein FliM
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_642_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11942..12418)
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037BC13B
fliL; flagellar basal body protein FliL
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_642_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12549..13646)
DNA (1098bp) protein (366aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000379ABF3
flagellar hook-length control protein FliK
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_642_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13661..14110)
DNA (450bp) protein (150aa)
Flagellar protein FliJ id=1317096 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
flagellar protein FliJ
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_642_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14138..15538)
DNA (1401bp) protein (467aa)
flagellar biosynthesis/type III secretory pathway ATPase FliI (EC:3.6.3.14)
ATP synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036C12F3
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_642_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15538..16191)
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037491CF
flagellar assembly protein FliH
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_642_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16184..17185)
DNA (1002bp) protein (334aa)
flagellar motor switch protein FliG n=1 Tax=Thiobacillus denitrificans RepID=UPI00038060D7
flagellar motor switch protein FliG
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_642_22
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17178..18815)
DNA (1638bp) protein (546aa)
flagellar M-ring protein FliF n=1 Tax=Thiobacillus denitrificans RepID=UPI000373C5CD
fliF; flagellar MS-ring protein
Flagellar M-ring protein {ECO:0000256|PIRNR:PIRNR004862}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_642_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19023..19367
DNA (345bp) protein (115aa)
Flagellar hook-basal body complex protein FliE id=1317091 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
fliE; flagellar hook-basal body protein FliE
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_642_24
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19672..20628)
DNA (957bp) protein (319aa)
chemotaxis protein CheV n=1 Tax=Thiobacillus thioparus RepID=UPI0003606C1F
chemotaxis protein CheW
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_642_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20675..21442)
DNA (768bp) protein (256aa)
hypothetical protein id=12495009 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_642_26
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21446..21739)
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000378A60A
flagellar protein FhlB
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_642_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21726..22733)
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000380F5AD
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_642_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22746..23075)
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C9D5B
flagellar protein FliT
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_642_29
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23089..23523)
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037AEAD6
flagellar protein FliS
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_642_30
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23538..25535)
DNA (1998bp) protein (666aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000376E53B
Flagellar hook protein FliD {ECO:0000313|EMBL:KIO48055.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
flagellar hook-associated 2-like
Displaying items 1-30 of 54 in total

View Taxonomy