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RTP_02272018_0_2um_scaffold_683

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_683_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..682)
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000361616F
glycosyltransferase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_683_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(660..1379)
DNA (720bp) protein (240aa)
Membrane protein, putative id=1348030 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_683_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1380..2129)
DNA (750bp) protein (250aa)
dolichol-phosphate mannosyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036BE215
group 2 family glycosyl transferase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_683_trna_1
unknown

Not on your lists

comp(2158..2245)
DNA (88bp)
transferRNA Ser
RTP_02272018_0_2um_scaffold_683_4
unknown

Not on your lists

comp(2339..2926)
DNA (588bp) protein (196aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_683_5
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2923..3450)
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Methylotenera sp. 1P/1 RepID=UPI00035F2294
alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen
Tax=RBG_16_Gamma2_65_34_curated
RTP_02272018_0_2um_scaffold_683_6
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3447..4265)
DNA (819bp) protein (273aa)
hypothetical protein, partial n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI0003703ADC
serine/threonin protein kinase
Tax=RBG_16_Gamma2_64_10_curated
RTP_02272018_0_2um_scaffold_683_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4417..4932
DNA (516bp) protein (172aa)
molecular chaperone GrpE n=1 Tax=Thiobacillus thioparus RepID=UPI00036A8592
molecular chaperone protein GrpE
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_683_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5020..6936
DNA (1917bp) protein (639aa)
Chaperone protein DnaK id=1348027 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
molecular chaperone DnaK
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_683_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7045..8154
DNA (1110bp) protein (370aa)
molecular chaperone DnaJ n=1 Tax=Thiobacillus denitrificans RepID=UPI000374FC17
molecular chaperone protein DnaJ
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_683_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8252..9022)
DNA (771bp) protein (257aa)
DNAase n=1 Tax=Thiobacillus thioparus RepID=UPI00038283A3
TatD-related deoxyribonuclease
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_683_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9089..9460)
DNA (372bp) protein (124aa)
type IV pilus assembly protein PilZ; K02676 type IV pilus assembly protein PilZ id=12493089 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
type IV pilus assembly protein PilZ
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_683_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9473..10456)
DNA (984bp) protein (328aa)
DNA polymerase III subunit delta' (EC:2.7.7.7)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000380C29C
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_683_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10453..11067)
DNA (615bp) protein (205aa)
thymidylate kinase (EC:2.7.4.9)
thymidylate kinase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036C32EA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_683_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11064..12053)
DNA (990bp) protein (330aa)
aminodeoxychorismate lyase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037B1D39
aminodeoxychorismate lyase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_683_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12037..12846)
DNA (810bp) protein (270aa)
aminodeoxychorismate lyase (EC:4.1.3.38)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003709FC3
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_683_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12843..14195)
DNA (1353bp) protein (451aa)
Anthranilate synthase id=1359358 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_683_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14192..15424)
DNA (1233bp) protein (411aa)
3-oxoacyl-ACP synthase (EC:2.3.1.41)
3-oxoacyl-ACP synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035E3D1D
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_683_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15454..15687)
DNA (234bp) protein (78aa)
acyl carrier protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037CB1D8
acyl carrier protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_683_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15775..16518)
DNA (744bp) protein (248aa)
3-oxoacyl-ACP reductase (EC:1.1.1.100)
3-oxoacyl-(Acyl-carrier-protein) reductase id=1359361 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_683_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16532..17470)
DNA (939bp) protein (313aa)
ACP S-malonyltransferase (EC:2.3.1.39)
malonyl CoA-ACP transacylase n=1 Tax=Thiobacillus thioparus RepID=UPI000365BE4B
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_683_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17482..18441)
DNA (960bp) protein (320aa)
3-oxoacyl-ACP synthase (EC:2.3.1.41)
3-oxoacyl-ACP synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003612939
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_683_22
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18438..19457)
DNA (1020bp) protein (340aa)
Phosphate acyltransferase {ECO:0000255|HAMAP-Rule:MF_00019}; EC=2.3.1.n2 {ECO:0000255|HAMAP-Rule:MF_00019};; Acyl-ACP phosphotransacylase {ECO:0000255|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000255|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000255|HAMAP-Rule:MF_00019}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
phosphate acyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003604250
glycerol-3-phosphate acyltransferase PlsX
RTP_02272018_0_2um_scaffold_683_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(19526..19705)
DNA (180bp) protein (60aa)
50S ribosomal protein L32 id=1360988 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
rpmF; 50S ribosomal protein L32
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_683_24
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19724..20026)
DNA (303bp) protein (101aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SIM1_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97507.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_683_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20323..21741
DNA (1419bp) protein (473aa)
pyruvate carboxylase subunit A (EC:6.3.4.14)
acetyl-CoA carboxylase subunit alpha n=1 Tax=Thiobacillus thioparus RepID=UPI0003618A3C
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_683_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21745..23589
DNA (1845bp) protein (615aa)
pyruvate carboxylase subunit B (EC:4.1.1.3)
Oxaloacetate decarboxylase, alpha subunit id=1360991 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_683_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23586..24209
DNA (624bp) protein (208aa)
septum formation protein Maf n=1 Tax=Thiobacillus thioparus RepID=UPI00036F81F4
Maf-like protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_683_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24209..24916
DNA (708bp) protein (236aa)
Probable transmembrane protein id=1342852 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
transmembrane protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_683_29
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24963..26453)
DNA (1491bp) protein (497aa)
DEAD/DEAH box helicase domain protein n=1 Tax=Burkholderia sp. (strain CCGE1003) RepID=E1T404_BURSG
DEAD/DEAH box helicase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying items 1-30 of 40 in total

View Taxonomy