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RTP_02272018_0_2um_scaffold_706

Search features with annotation key words

Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_706_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1592
DNA (1590bp) protein (530aa)
peptide chain release factor 3 n=1 Tax=Thiobacillus denitrificans RepID=UPI000376929E
prfC; peptide chain release factor 3
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_706_2
Pseudoalteromonas sp. BSi20429, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1620..2111)
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035F0F39
Putative uncharacterized protein {ECO:0000313|EMBL:GAA69880.1}; TaxID=1097676 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoalteromonas sp. BSi20429.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_706_3
GWA2_Gallionellales_60_142_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2313..2579)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QTF8_9ZZZZ
hypothetical protein
Tax=GWA2_Gallionellales_60_142_curated
RTP_02272018_0_2um_scaffold_706_4
RIFOXYC2_FULL_Burkholderiales_59_8_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2563..2856)
DNA (294bp) protein (98aa)
Protein containing DUF497 n=1 Tax=mine drainage metagenome RepID=T1AWT7_9ZZZZ
hypothetical protein
Tax=RIFOXYC2_FULL_Burkholderiales_59_8_curated
RTP_02272018_0_2um_scaffold_706_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2902..4269)
DNA (1368bp) protein (456aa)
DNA repair protein RadA n=1 Tax=Thiobacillus thioparus RepID=UPI000367B8B8
DNA repair protein RadA
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_706_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4301..4588)
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Methyloversatilis universalis RepID=UPI00037A9939
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_706_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4592..4873)
DNA (282bp) protein (94aa)
Putative uncharacterized protein n=1 Tax=Methyloversatilis universalis FAM5 RepID=F5R7L3_9RHOO
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_706_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4932..5825)
DNA (894bp) protein (298aa)
cysM; cysteine synthase B (EC:2.5.1.47)
cysteine synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI000372BEE4
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_706_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5922..7244)
DNA (1323bp) protein (441aa)
UDP-glucose dehydrogenase (EC:1.1.1.22)
UDP-glucose dehydrogenase id=1332583 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_706_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7255..7953)
DNA (699bp) protein (233aa)
orotidine-5'-phosphate decarboxylase (EC:4.1.1.23)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036B89FC
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_706_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7988..9154)
DNA (1167bp) protein (389aa)
N-acetylglucosaminyl transferase n=1 Tax=Thiobacillus denitrificans RepID=UPI000369DF0B
tetratricopeptide repeat-containing protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_706_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9160..9447)
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036B7A1F
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_706_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9618..9902)
DNA (285bp) protein (95aa)
Integration host factor subunit beta id=1332579 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
integration host factor subunit beta
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_706_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9905..11626)
DNA (1722bp) protein (574aa)
30S ribosomal protein S1 n=1 Tax=Thiobacillus denitrificans RepID=UPI000380376F
rpsA; 30S ribosomal protein S1
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_706_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11735..12409)
DNA (675bp) protein (225aa)
cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase id=1332577 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_706_16
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12406..13692)
DNA (1287bp) protein (429aa)
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000255|HAMAP-Rule:MF_00210}; EC=2.5.1.19 {ECO:0000255|HAMAP-Rule:MF_00210};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00210}; Short=EPSP synthase {ECO:0000255|HAMAP-Rule:MF_00210};; Short=EPSPS {ECO:0000255|HAMAP-Rule:MF_00210};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=AROA_THIDA
RTP_02272018_0_2um_scaffold_706_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13692..14558)
DNA (867bp) protein (289aa)
prephenate dehydrogenase (EC:1.3.1.12)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000369C072
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_706_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14555..15721)
DNA (1167bp) protein (389aa)
histidinol-phosphate aminotransferase (EC:2.6.1.-)
histidinol-phosphate aminotransferase n=1 Tax=Thiobacillus thioparus RepID=UPI000365F667
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_706_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15718..16785)
DNA (1068bp) protein (356aa)
chorismate mutase (EC:4.2.1.51 5.4.99.5)
prephenate dehydratase n=1 Tax=Thiobacillus thioparus RepID=UPI00036136EF
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_706_20
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16791..17969)
DNA (1179bp) protein (393aa)
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95)
3-phosphoglycerate dehydrogenase n=1 Tax=Thiobacillus denitrificans RepID=UPI000373259F
D-isomer specific 2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:AAZ96903.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_706_21
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17962..19053)
DNA (1092bp) protein (364aa)
phosphoserine aminotransferase (EC:2.6.1.52)
MFS transporter n=1 Tax=Thiobacillus denitrificans RepID=UPI00037B9C1D
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_706_22
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(19057..21399)
DNA (2343bp) protein (781aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=1 Tax=Thiobacillus denitrificans RepID=UPI00037D33D9
RTP_02272018_0_2um_scaffold_706_23
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21513..23639)
DNA (2127bp) protein (709aa)
outer membrane receptor protein n=1 Tax=Janthinobacterium lividum RepID=UPI000289E695
Outer membrane receptor protein {ECO:0000313|EMBL:KHA78765.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
outer membrane receptor protein
RTP_02272018_0_2um_scaffold_706_24
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23661..24137)
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000375EA5C
signal peptide protein
Possible signal peptide protein {ECO:0000313|EMBL:AAZ96861.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_706_25
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24134..25354)
DNA (1221bp) protein (407aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000364CC41
BNR repeat-containing protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96860.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_706_26
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25519..26853
DNA (1335bp) protein (445aa)
N-ethylammeline chlorohydrolase n=1 Tax=Thiobacillus thioparus RepID=UPI00035FB450
N-ethylammeline chlorohydrolase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_706_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26870..27568
DNA (699bp) protein (233aa)
3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64)
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00037FC44D
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_706_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27573..28238
DNA (666bp) protein (222aa)
2-phosphoglycolate phosphatase (EC:3.1.3.18)
phosphoglycolate phosphatase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037504EB
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_706_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28241..28627
DNA (387bp) protein (129aa)
Putative membrane protein id=1345801 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_706_30
unknown

Not on your lists

comp(28900..29127)
DNA (228bp) protein (76aa)

This feature has no annotations

Displaying items 1-30 of 71 in total

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