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RTP_02272018_0_2um_scaffold_716

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_716_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3..254
DNA (252bp) protein (84aa)
30S ribosomal protein S18 id=1355427 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
rpsR; 30S ribosomal protein S18
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_716_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


265..714
DNA (450bp) protein (150aa)
50S ribosomal protein L9 id=1355426 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
50S ribosomal protein L9
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_716_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

849..2240
DNA (1392bp) protein (464aa)
primary replicative DNA helicase (EC:3.6.1.-)
DNA helicase n=1 Tax=Thiobacillus thioparus RepID=UPI000362D1F4
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_716_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2245..3312
DNA (1068bp) protein (356aa)
alanine racemase (EC:5.1.1.1)
alanine racemase n=1 Tax=Thiobacillus thioparus RepID=UPI000374B462
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_716_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3406..3693)
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000381116C
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_716_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3694..4722)
DNA (1029bp) protein (343aa)
Glycine cleavage T-protein (Aminomethyl transferase) id=1338455 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
glycine cleavage system protein T
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_716_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4775..5206
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000380E4EA
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_716_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5142..6800)
DNA (1659bp) protein (553aa)
L-aspartate oxidase (EC:1.4.3.16)
L-aspartate oxidase id=1338457 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_716_9
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6909..7505
DNA (597bp) protein (199aa)
RNA polymerase sigma factor RpoE n=1 Tax=Thiobacillus denitrificans RepID=UPI00036F16A9
RNA polymerase sigma factor RpoE
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_716_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7508..8050
DNA (543bp) protein (181aa)
Putative uncharacterized protein id=1338459 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_716_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8050..9006
DNA (957bp) protein (319aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000365F278
sigma E regulatory protein, MucB/RseB
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_716_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9014..9448
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036C9E40
positive regulator of sigma E activity
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_716_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9445..10845
DNA (1401bp) protein (467aa)
peptidase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037F7178
peptidase S1C, Do
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_716_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10949..11140
DNA (192bp) protein (64aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000361400C
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_716_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11205..13004
DNA (1800bp) protein (600aa)
Elongation factor 4 {ECO:0000255|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000255|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000255|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000255|HAMAP-Rule:MF_00071}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
elongation factor 4 n=1 Tax=Thiobacillus thioparus RepID=UPI000375E13F
GTP-binding protein LepA
RTP_02272018_0_2um_scaffold_716_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13010..13819
DNA (810bp) protein (270aa)
signal peptidase I (EC:3.4.21.89)
signal peptidase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003777F14
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_716_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13830..14231
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000376AB40
transmembrane protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_716_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14176..14904
DNA (729bp) protein (243aa)
rnc; ribonuclease III (EC:3.1.26.3)
Ribonuclease 3 id=1343011 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_716_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14931..15815
DNA (885bp) protein (295aa)
GTPase Era n=1 Tax=Thiobacillus denitrificans RepID=UPI0003667916
GTPase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_716_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15839..16570
DNA (732bp) protein (244aa)
DNA repair protein RecO id=1343009 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
recO; DNA repair protein RecO
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_716_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16567..17295
DNA (729bp) protein (243aa)
pyridoxine 5''''-phosphate synthase n=1 Tax=Thiobacillus thioparus RepID=UPI00037ABC59
pyridoxine 5'-phosphate synthase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_716_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17391..19358)
DNA (1968bp) protein (656aa)
pyruvate kinase (EC:2.7.1.40)
Pyruvate kinase id=1332590 bin=GWE1_T_denit_62_9 species=Tolumonas auensis genus=Tolumonas taxon_order=Aeromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_716_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19486..19917)
DNA (432bp) protein (144aa)
Putative uncharacterized protein id=1332589 bin=GWE1_T_denit_62_9 species=Nitrosomonas sp. genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_716_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20120..20347
DNA (228bp) protein (76aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003763841
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_716_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20461..21003
DNA (543bp) protein (181aa)
Phosphorylase id=1332587 bin=GWE1_T_denit_62_9 species=Nitrosococcus halophilus genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_716_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21000..22169
DNA (1170bp) protein (390aa)
alpha-glucan phosphorylase (EC:2.4.1.1)
Phosphorylase id=1332587 bin=GWE1_T_denit_62_9 species=Nitrosococcus halophilus genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_716_27
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22292..22837
DNA (546bp) protein (182aa)
Putative uncharacterized protein id=1332586 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_716_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23116..23544)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037FC5E2
putative membrane-associated protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_716_29
BJP_IG2157_Anaerolineales_55_23, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(23751..24410)
DNA (660bp) protein (220aa)
Exopolysaccharide synthesis, ExoD n=1 Tax=Limnobacter sp. MED105 RepID=A6GM57_9BURK
Exopolysaccharide synthesis ExoD
Tax=BJP_IG2157_Anaerolineales_55_23
RTP_02272018_0_2um_scaffold_716_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24663..25595)
DNA (933bp) protein (311aa)
preprotein translocase subunit SecF n=1 Tax=Thiobacillus denitrificans RepID=UPI00036619AC
secF; preprotein translocase subunit SecF
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 31 in total

View Taxonomy