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RTP_02272018_0_2um_scaffold_2060

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_2060_1
Methylomicrobium alcaliphilum, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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329..757
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4T471_META2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCE23808.1}; TaxID=1091494 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM; B-2133 / 20Z).;"
RTP_02272018_0_2um_scaffold_2060_2
delta proteobacterium MLMS-1, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

754..972
DNA (219bp) protein (73aa)
hypothetical protein n=1 Tax=Methylophilus methylotrophus RepID=UPI000381D08A
Uncharacterized protein {ECO:0000313|EMBL:EAT04358.1}; TaxID=262489 species="Bacteria; Proteobacteria; Deltaproteobacteria.;" source="delta proteobacterium MLMS-1.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_2060_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1198..1971)
DNA (774bp) protein (258aa)
exodeoxyribonuclease III (EC:3.1.11.2)
Exodeoxyribonuclease III xth id=1358715 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_2060_4
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1968..2132)
DNA (165bp) protein (55aa)
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
RTP_02272018_0_2um_scaffold_2060_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2167..2718)
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036B92D7
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_2060_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2921..4960)
DNA (2040bp) protein (680aa)
oligopeptidase A (EC:3.4.24.70)
oligopeptidase A n=1 Tax=Thiobacillus thioparus RepID=UPI00037060C3
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_2060_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5027..5575
DNA (549bp) protein (183aa)
carbonic anhydrase id=12494168 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
carbonic anhydrase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_2060_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5601..6095
DNA (495bp) protein (165aa)
thioredoxin n=1 Tax=Thiobacillus thioparus RepID=UPI00037EE57F
thioredoxin
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_2060_9
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6095..6352
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000381767B
Uncharacterized protein {ECO:0000313|EMBL:EIJ35143.1}; Flags: Precursor;; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
RTP_02272018_0_2um_scaffold_2060_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6371..8035
DNA (1665bp) protein (555aa)
ABC transporter ATP-binding protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003718F1E
ABC transporter ATP-binding protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_2060_11
Chlorobium limicola, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

comp(8032..8337)
DNA (306bp) protein (102aa)
Plasmid stabilization system n=1 Tax=Chlorobium limicola (strain DSM 245 / NBRC 103803) RepID=B3ECY1_CHLL2
plasmid stabilization system
Plasmid stabilization system {ECO:0000313|EMBL:ACD90406.1}; TaxID=290315 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Chlorobium limicola (strain DSM 245 / NBRC 103803).;"
RTP_02272018_0_2um_scaffold_2060_12
GWA2_Gallionellales_59_43_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8334..8615)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Burkholderia vietnamiensis (strain G4 / LMG 22486) RepID=A4JGM6_BURVG
hypothetical protein
Tax=GWA2_Gallionellales_59_43_curated
RTP_02272018_0_2um_scaffold_2060_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8795..9241
DNA (447bp) protein (149aa)
Putative uncharacterized protein id=1358708 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_2060_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9257..9475)
DNA (219bp) protein (73aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000378A97E
SlyX protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_2060_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9475..10008)
DNA (534bp) protein (178aa)
alkyl hydroperoxide reductase id=12494162 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
alkyl hydroperoxide reductase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_2060_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10037..10420
DNA (384bp) protein (128aa)
transmembrane protein; K08973 putative membrane protein id=12494161 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
transmembrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_2060_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10484..11680
DNA (1197bp) protein (399aa)
N6-adenine-specific DNA methylase id=1358215 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
N-6 adenine-specific DNA methylase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_2060_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11689..11958
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036F0A7F
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_2060_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11970..13097)
DNA (1128bp) protein (376aa)
Pilus retraction protein PilT id=1358217 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
pilus retraction protein PilT
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_2060_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13108..14082)
DNA (975bp) protein (325aa)
Pilus retraction protein PilT id=1358218 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
pilus retraction ATPase PilT
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_2060_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14168..14875
DNA (708bp) protein (236aa)
hypothetical protein; K06997 id=12494578 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_2060_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15290..15754
DNA (465bp) protein (155aa)
pyrroline-5-carboxylate reductase (EC:1.5.1.2)
pyrroline-5-carboxylate reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003684BA5
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_2060_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15917..16492
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003713192
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_2060_24
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16852..18072
DNA (1221bp) protein (407aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003691300
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98368.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Displaying 24 items

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