ggKbase home page

RTP_02272018_0_2um_scaffold_426

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_426_1
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(414..1427)
DNA (1014bp) protein (338aa)
hypothetical protein n=1 Tax=Pseudomonas veronii RepID=UPI00036A6200
Transposase {ECO:0000313|EMBL:KIF61579.1}; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
transposase family protein
RTP_02272018_0_2um_scaffold_426_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1775..3742)
DNA (1968bp) protein (656aa)
acetyl-CoA synthetase (EC:6.2.1.1)
Acetyl-coenzyme A synthetase id=1348264 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_426_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3825..6518
DNA (2694bp) protein (898aa)
glutamate-ammonia-ligase adenylyltransferase (EC:2.7.7.42)
glutamine-synthetase adenylyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003710D6A
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_426_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6522..7076)
DNA (555bp) protein (185aa)
Uncharacterized protein id=1329029 bin=GWE1_T_denit_62_9 species=Rubrivivax benzoatilyticus genus=Rubrivivax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_426_5
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7086..8726)
DNA (1641bp) protein (547aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AI15_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN35816.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_02272018_0_2um_scaffold_426_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8862..11552
DNA (2691bp) protein (897aa)
pma1; putative cation-transporting P-type ATPase (EC:3.6.3.-)
Putative cation-transporting P-type ATPase id=1329030 bin=GWE1_T_denit_62_9 species=Thauera sp. 63 genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_426_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11660..13396
DNA (1737bp) protein (579aa)
Sodium/hydrogen exchanger family protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SLF8_THIDA
sodium/hydrogen exchanger family protein
Sodium/hydrogen exchanger family protein {ECO:0000313|EMBL:AAZ96453.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_426_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13531..15201
DNA (1671bp) protein (557aa)
Sodium/hydrogen exchanger id=1329031 bin=GWE1_T_denit_62_9 species=Thauera sp. 63 genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
sodium/hydrogen exchanger
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_426_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15198..16094
DNA (897bp) protein (299aa)
UspA domain protein id=1329032 bin=GWE1_T_denit_62_9 species=Thauera sp. 63 genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
uspA; universal stress protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_426_10
Nitrosomonas sp. Is79A3, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16107..16802
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GEZ2_NITSI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEJ01124.1}; TaxID=261292 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. (strain Is79A3).;"
RTP_02272018_0_2um_scaffold_426_11
Candidatus Accumulibacter sp. BA-94, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16799..17296
DNA (498bp) protein (166aa)
Cation antiporter n=1 Tax=Shewanella sediminis (strain HAW-EB3) RepID=A8FT28_SHESH
Putative monovalent cation/H+ antiporter subunit E {ECO:0000313|EMBL:EXI91112.1}; TaxID=1454005 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-94.;"
cation antiporter
RTP_02272018_0_2um_scaffold_426_12
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17293..17574
DNA (282bp) protein (94aa)
Multiple resistance and pH regulation protein F n=1 Tax=Shewanella sediminis (strain HAW-EB3) RepID=A8FT30_SHESH
multiple resistance and pH regulation protein F
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
RTP_02272018_0_2um_scaffold_426_13
Candidatus Accumulibacter sp. BA-94, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17564..17872
DNA (309bp) protein (103aa)
Na+/H+ antiporter subunit n=1 Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0DS39_THIND
Multiple resistance and pH homeostasis protein G {ECO:0000313|EMBL:EXI91110.1}; TaxID=1454005 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-94.;"
Na+/H+ antiporter subunit
RTP_02272018_0_2um_scaffold_426_14
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17869..18129
DNA (261bp) protein (87aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALJ24 RepID=UPI00037FE342
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
RTP_02272018_0_2um_scaffold_426_15
Candidatus Accumulibacter sp. BA-94, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18126..18788
DNA (663bp) protein (221aa)
Na+/H+ antiporter MnhB subunit-related protein n=1 Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0DS19_THIND
Putative monovalent cation/H+ antiporter subunit B {ECO:0000313|EMBL:EXI91108.1}; TaxID=1454005 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-94.;"
Na+/H+ antiporter MnhB subunit-related protein
RTP_02272018_0_2um_scaffold_426_16
Candidatus Accumulibacter sp. BA-94, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18785..19105
DNA (321bp) protein (107aa)
NADH-ubiquinone oxidoreductase, chain 4L n=2 Tax=Thioalkalivibrio RepID=L0DS44_THIND
Putative monovalent cation/H+ antiporter subunit C {ECO:0000313|EMBL:EXI91107.1}; TaxID=1454005 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-94.;"
NADH-ubiquinone oxidoreductase
RTP_02272018_0_2um_scaffold_426_17
Candidatus Accumulibacter sp. BA-94, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19098..20558
DNA (1461bp) protein (487aa)
Multisubunit sodium/proton antiporter, MrpD subunit (2.A.63.1) n=1 Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) RepID=D7CQ18_TRURR
Multiple resistance and pH homeostasis protein D {ECO:0000313|EMBL:EXI91106.1}; TaxID=1454005 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-94.;"
multisubunit sodium/proton antiporter subunit MrpD
RTP_02272018_0_2um_scaffold_426_18
Candidatus Accumulibacter sp. BA-94, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20555..22066
DNA (1512bp) protein (504aa)
Hydrogenase-4 component B {ECO:0000313|EMBL:EXI91105.1}; EC=1.-.-.- {ECO:0000313|EMBL:EXI91105.1};; TaxID=1454005 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-94.;"
Formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter, MnhD subunit n=1 Tax=Thiorhodovibrio sp. 970 RepID=H8Z242_9GAMM
NADH dehydrogenase subunit M
RTP_02272018_0_2um_scaffold_426_19
Candidatus Accumulibacter sp. BA-94, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22054..23673
DNA (1620bp) protein (540aa)
Hydrogenase-4 component B {ECO:0000313|EMBL:EXI91104.1}; EC=1.-.-.- {ECO:0000313|EMBL:EXI91104.1};; TaxID=1454005 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-94.;"
NADH/Ubiquinone/plastoquinone (Complex I) n=1 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DGF0_9GAMM
NADH-ubiquinone oxidoreductase
RTP_02272018_0_2um_scaffold_426_20
Candidatus Accumulibacter sp. BA-94, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23686..25362
DNA (1677bp) protein (559aa)
Hydrogenase-4 component B {ECO:0000313|EMBL:EXI91104.1}; EC=1.-.-.- {ECO:0000313|EMBL:EXI91104.1};; TaxID=1454005 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-94.;"
NADH/Ubiquinone/plastoquinone (Complex I) n=1 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DGF0_9GAMM
formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit
RTP_02272018_0_2um_scaffold_426_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25507..26583
DNA (1077bp) protein (359aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037F3E22
thioredoxin
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_426_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26584..28140)
DNA (1557bp) protein (519aa)
Sulphate transporter id=1342801 bin=GWE1_T_denit_62_9 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
sulfate transporter
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_426_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28360..31158
DNA (2799bp) protein (933aa)
monovalent cation/H+ antiporter subunit A (EC:1.6.99.5)
cation:proton antiporter n=1 Tax=Thiobacillus denitrificans RepID=UPI000367A2E8
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_426_24
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31158..31490
DNA (333bp) protein (111aa)
cation:proton antiporter n=1 Tax=Thiobacillus denitrificans RepID=UPI0003763921
monovalent cation/H+ antiporter subunit C
Multicomponent K+:H+ antiporter subunit C {ECO:0000313|EMBL:AAZ96449.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_426_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31490..33067
DNA (1578bp) protein (526aa)
monovalent cation/H+ antiporter subunit D (EC:1.6.99.5)
NADH dehydrogenase (Quinone) id=1342797 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_426_26
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33064..33558
DNA (495bp) protein (165aa)
Multicomponent K+:H+ antiporter subunit E n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SF17_THIDA
monovalent cation/H+ antiporter subunit E
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_426_27
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33558..33827
DNA (270bp) protein (90aa)
Multisubunit Na+/H+ antiporter, subunit F id=1342795 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
multisubunit Na+/H+ antiporter subunit F
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_426_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33836..34174
DNA (339bp) protein (113aa)
cation:proton antiporter n=1 Tax=Thiobacillus denitrificans RepID=UPI0003677420
monovalent cation/H+ antiporter subunit G
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_426_29
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34245..35618
DNA (1374bp) protein (458aa)
serine protease n=1 Tax=Thiobacillus denitrificans RepID=UPI0003740B75
transmembrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_426_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35611..36369
DNA (759bp) protein (253aa)
membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000370E3A2
SPFH domain-containing protein/band 7 family protein
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 37 in total

View Taxonomy