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RTP_02272018_0_2um_scaffold_515

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_515_1
unknown

Not on your lists

comp(2..133)
DNA (132bp) protein (44aa)
hypothetical protein n=1 Tax=Methylovulum miyakonense RepID=UPI0003635631
RTP_02272018_0_2um_scaffold_515_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(547..873)
DNA (327bp) protein (109aa)
Putative uncharacterized protein id=1323107 bin=GWE1_T_denit_62_9 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_515_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1191..1445)
DNA (255bp) protein (85aa)
Glutaredoxin 3 n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJS1_THIDA
glutaredoxin 3
Glutaredoxin 3 {ECO:0000313|EMBL:AAZ97079.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_515_4

Not on your lists

comp(1483..2286)
DNA (804bp) protein (268aa)
dihydrodipicolinate reductase (EC:1.3.1.26)
dihydrodipicolinate reductase n=1 Tax=Thiobacillus thioparus RepID=UPI00035C46A1
Dihydrodipicolinate reductase {ECO:0000313|EMBL:KKS79161.1}; TaxID=1618624 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Azambacteria) bacterium GW2011_GWE1_42_9.;"
RTP_02272018_0_2um_scaffold_515_5

Not on your lists

comp(2283..3281)
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003604F8D
Outer membrane protein assembly factor BamE {ECO:0000313|EMBL:KKS79160.1}; TaxID=1618624 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Azambacteria) bacterium GW2011_GWE1_42_9.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_515_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3361..3810
DNA (450bp) protein (150aa)
Fur family transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI000382D5A6
ferric uptake regulator family protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_515_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3798..4661)
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000368E337
substrate-binding periplasmic (PBP) ABC transporter protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_515_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4658..5254)
DNA (597bp) protein (199aa)
phosphoglycerate kinase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035ECE7A
alpha-ribazole-5'-phosphate phosphatase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_515_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5251..6375)
DNA (1125bp) protein (375aa)
gamma-glutamyl kinase (EC:2.7.2.11)
gamma-glutamyl kinase n=1 Tax=Thiobacillus thioparus RepID=UPI0003636C46
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_515_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6372..6869)
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037022B5
lipoprotein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_515_11
unknown

Not on your lists

6899..6994
DNA (96bp) protein (32aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_515_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7064..7972
DNA (909bp) protein (303aa)
transporter n=1 Tax=Thiobacillus denitrificans RepID=UPI00037D574F
cation efflux protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_515_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7994..9205)
DNA (1212bp) protein (404aa)
cyclopropane-fatty-acyl-phospholipid synthase (EC:2.1.1.79)
Cyclopropane-fatty-acyl-phospholipid synthase id=1353829 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_515_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9259..9843)
DNA (585bp) protein (195aa)
Putative uncharacterized protein id=1353830 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_515_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9866..11194)
DNA (1329bp) protein (443aa)
Fe-S oxidoreductase n=1 Tax=Thiobacillus thioparus RepID=UPI00037C275D
ferredoxin
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_515_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11282..11701)
DNA (420bp) protein (140aa)
putative oxidative stress related rubrerythrin protein id=12497253 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
oxidative stress related rubrerythrin protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_515_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11906..12307
DNA (402bp) protein (134aa)
methionine sulfoxide reductase B (EC:1.8.4.11)
methionine sulfoxide reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI000374C467
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_515_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12311..13015
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003668F16
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_515_19
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13086..14024
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C72C4
hydrolase
Putative hydrolase {ECO:0000313|EMBL:AAZ97056.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_515_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14070..14414)
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A858B
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_515_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14411..15814)
DNA (1404bp) protein (468aa)
DEAD/DEAH box helicase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037BA5FC
DEAD/DEAH box helicase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_515_22
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15799..16557)
DNA (759bp) protein (253aa)
beta-lactamase n=1 Tax=Thiobacillus denitrificans RepID=UPI000380B6C0
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_515_23
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16703..17803)
DNA (1101bp) protein (367aa)
NlpBDapX family lipoprotein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036CCE4D
lipoprotein
Outer membrane protein assembly factor BamC {ECO:0000255|HAMAP-Rule:MF_00924}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_515_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17831..18757)
DNA (927bp) protein (309aa)
dapA; dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=DAPA_THIDA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_515_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18832..19581)
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037E213C
flagellar biosynthetic fliR transmembrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_515_26
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19589..19843)
DNA (255bp) protein (85aa)
flagellar biosynthesis protein FliQ n=1 Tax=Thiobacillus thioparus RepID=UPI00037AAAAF
flagellar biosynthetic protein FliQ
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_515_27
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19843..20589)
DNA (747bp) protein (249aa)
flagellar biosynthesis protein FliP n=1 Tax=Thiobacillus thioparus RepID=UPI00035E84E0
fliP; flagellar biosynthesis protein FliP
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_515_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20586..20975)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037B8AD5
flagellar protein FliO
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_515_29
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20968..21432)
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000378454F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97046.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_515_30
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21441..21887)
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035C7F22
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97045.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Displaying items 1-30 of 41 in total

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