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RTP_02272018_0_2um_scaffold_805

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_805_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


66..581
DNA (516bp) protein (172aa)
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 id=12495306 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rpsE; 30S ribosomal protein S5
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_805_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


585..770
DNA (186bp) protein (62aa)
rpmD; 50S ribosomal protein L30
50S ribosomal protein L30 id=1337003 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_805_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


771..1205
DNA (435bp) protein (145aa)
50S ribosomal protein L15P; K02876 large subunit ribosomal protein L15 id=12495304 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
50S ribosomal protein L15
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_805_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1225..2538
DNA (1314bp) protein (438aa)
Protein translocase subunit SecY id=1337005 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
secY; preprotein translocase subunit SecY
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_805_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2538..2756
DNA (219bp) protein (73aa)
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1 id=12498464 bin=THIO_MID species=unknown genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
infA; translation initiation factor IF-1
Translation initiation factor IF-1 1 {ECO:0000255|HAMAP-Rule:MF_00075}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_805_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3002..3358
DNA (357bp) protein (119aa)
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 id=12495301 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rpsM; 30S ribosomal protein S13
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_805_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3368..3760
DNA (393bp) protein (131aa)
30S ribosomal protein S11 id=1337008 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
30S ribosomal protein S11
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_805_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3775..4404
DNA (630bp) protein (210aa)
30S ribosomal protein S4 id=1337009 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
rpsD; 30S ribosomal protein S4
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_805_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4434..5414
DNA (981bp) protein (327aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha id=1337010 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_805_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5499..5888
DNA (390bp) protein (130aa)
50S ribosomal protein L17 n=1 Tax=Thiobacillus denitrificans RepID=UPI000375CB3B
50S ribosomal protein L17
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_805_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6022..6750
DNA (729bp) protein (243aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000368F620
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_805_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6900..8360)
DNA (1461bp) protein (487aa)
hydroxypyruvate reductase (EC:1.1.1.81)
Hydroxypyruvate reductase id=1337013 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_805_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8481..8750)
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000377EBE0
lipoprotein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_805_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8877..9611)
DNA (735bp) protein (245aa)
ribosomal large subunit pseudouridine synthase F (EC:5.4.99.-)
Pseudouridine synthase, Rsu id=1337017 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_805_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9880..12702)
DNA (2823bp) protein (941aa)
excinuclease ABC subunit A n=1 Tax=Thiobacillus thioparus RepID=UPI00036C33A3
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
excinuclease ABC subunit A
RTP_02272018_0_2um_scaffold_805_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12801..14156
DNA (1356bp) protein (452aa)
membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037D015B
major facilitator transporter
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_805_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14207..14698
DNA (492bp) protein (164aa)
single-stranded DNA-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036BD88D
single-strand binding protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_805_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14767..16833
DNA (2067bp) protein (689aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000377DAC5
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_805_19

Not on your lists

16947..17204
DNA (258bp) protein (86aa)
Regulatory protein, FmdB family n=1 Tax=sediment metagenome RepID=D9PMS5_9ZZZZ
Regulatory protein, FmdB family {ECO:0000313|EMBL:EFK95148.1}; TaxID=749907 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_805_20

Not on your lists


17469..19259
DNA (1791bp) protein (597aa)
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:EFK95333.1}; EC=6.1.1.12 {ECO:0000313|EMBL:EFK95333.1};; TaxID=749907 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12)
aspartyl-tRNA synthetase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036DAC15
RTP_02272018_0_2um_scaffold_805_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19424..19729
DNA (306bp) protein (102aa)
RNA polymerase subunit sigma-32 n=1 Tax=Thiobacillus denitrificans RepID=UPI0003665A40
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_805_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19726..20166
DNA (441bp) protein (147aa)
NUDIX hydrolase id=1360783 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
ntpA; dATP pyrophosphohydrolase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_805_23
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20174..20926
DNA (753bp) protein (251aa)
endonuclease/exonuclease/phosphatase n=1 Tax=Thiobacillus thioparus RepID=UPI000372674B
endonuclease / exonuclease / phosphatase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_805_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20926..22116
DNA (1191bp) protein (397aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000374C430
phospholipase D/transphosphatidylase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_805_25
BJP_IG2158_Anaerolineales_38_74, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

22404..22640
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000381819E
Tax=BJP_IG2158_Anaerolineales_38_74
RTP_02272018_0_2um_scaffold_805_26
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22637..23047
DNA (411bp) protein (137aa)
PilT protein domain protein n=1 Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E766_GEOLS
PilT protein domain-containing protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
Displaying 26 items

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