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RTP_02272018_0_2um_scaffold_915

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Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_915_1
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1870)
DNA (1869bp) protein (623aa)
Putative prolin-rich exported protein n=1 Tax=Azoarcus sp. KH32C RepID=H0PUX4_9RHOO
putative prolin-rich exported protein
Tax=BJP_08E140C01_Xanthomonadales_64_42
RTP_02272018_0_2um_scaffold_915_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2441..2872)
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003732159
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_915_3
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3215..4117)
DNA (903bp) protein (301aa)
Putative signal peptide protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21R46_RHOFD
putative signal peptide protein
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
RTP_02272018_0_2um_scaffold_915_4
RIFOXYC1_FULL_Bdellovibrionales_37_79_curated, Bacteroivoracaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(4330..4917)
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Leeia oryzae RepID=UPI000381DBEF
hypothetical protein
Tax=RIFOXYC1_FULL_Bdellovibrionales_37_79_curated
RTP_02272018_0_2um_scaffold_915_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4974..5567)
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Leeia oryzae RepID=UPI000372CA60
Putative secreted protein {ECO:0000313|EMBL:EYR81693.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_915_6
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5688..5885)
DNA (198bp) protein (66aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47EA2_DECAR
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
RTP_02272018_0_2um_scaffold_915_7
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6047..6625)
DNA (579bp) protein (193aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47EA0_DECAR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP49234.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
RTP_02272018_0_2um_scaffold_915_8
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7033..7611
DNA (579bp) protein (193aa)
Uncharacterized protein {ECO:0000313|EMBL:EXI90248.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
Transcriptional regulator, Crp/Fnr family id=1312394 bin=GWE1_T_denit_62_9 species=unknown genus=Methylovorus taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Crp/Fnr family transcriptional regulator
RTP_02272018_0_2um_scaffold_915_9
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7685..8428)
DNA (744bp) protein (248aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GLI0_NITSI
Crp/Fnr family transcriptional regulator
Tax=RBG_16_Gamma2_65_34_curated
RTP_02272018_0_2um_scaffold_915_10
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8453..9274)
DNA (822bp) protein (274aa)
Putative PAS/PAC sensor protein n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GLI1_NITSI
histidine kinase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
RTP_02272018_0_2um_scaffold_915_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9797..10762)
DNA (966bp) protein (322aa)
Response regulator receiver modulated diguanylate cyclase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21SK1_RHOFD
diguanylate cyclase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_915_12
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10762..13770)
DNA (3009bp) protein (1003aa)
PAS/PAC sensor hybrid histidine kinase {ECO:0000313|EMBL:ABD71253.1}; EC=2.7.3.- {ECO:0000313|EMBL:ABD71253.1};; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
PAS/PAC sensor hybrid histidine kinase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21SK0_RHOFD
PAS/PAC sensor hybrid histidine kinase
RTP_02272018_0_2um_scaffold_915_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14006..14752)
DNA (747bp) protein (249aa)
UPF0176 protein Tbd_0683 id=1326762 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
rhodanese superfamily protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_915_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14851..15774
DNA (924bp) protein (308aa)
SAM-dependent methyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003683AC3
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_915_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15743..16285)
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003829DA7
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_915_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16397..16603)
DNA (207bp) protein (69aa)
Possible Cold-shock DNA-binding domain protein id=1326767 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
cold-shock DNA-binding protein family protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_915_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16743..17318)
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A8977
aspartyl protease
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_915_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17425..17907)
DNA (483bp) protein (161aa)
YbaK-like protein id=1326769 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
prolyl-tRNA synthetase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_915_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17988..20429)
DNA (2442bp) protein (814aa)
Putative ATP-dependent protease LA, putative id=1326770 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
ATP-dependent protease LA
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_915_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20614..21816)
DNA (1203bp) protein (401aa)
Putative uncharacterized protein id=1326771 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_915_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21904..23067
DNA (1164bp) protein (388aa)
Major facilitator superfamily protein id=1326772 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
major facilitator superfamily protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_915_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23140..23451
DNA (312bp) protein (104aa)
hypothetical protein id=1326773 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_915_23
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23499..24116
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALJ16 RepID=UPI00037A72EC
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
RTP_02272018_0_2um_scaffold_915_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24154..25878)
DNA (1725bp) protein (575aa)
Putative Adenylate/Guanylate Cyclase id=1326777 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
adenylate/guanylate cyclase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_915_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25958..27199)
DNA (1242bp) protein (414aa)
chorismate synthase (EC:4.2.3.5)
chorismate synthase n=1 Tax=Thiobacillus thioparus RepID=UPI00036E8789
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_915_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27211..28290
DNA (1080bp) protein (360aa)
transaldolase (EC:2.2.1.2)
transaldolase n=1 Tax=Thiobacillus thioparus RepID=UPI00037FC0AF
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_915_27
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28400..29509
DNA (1110bp) protein (370aa)
S-(hydroxymethyl)glutathione dehydrogenase n=1 Tax=Thiobacillus thioparus RepID=UPI000364247C
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_915_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29518..30354
DNA (837bp) protein (279aa)
S-formylglutathione hydrolase (EC:3.1.2.12)
S-formylglutathione hydrolase id=1326782 bin=GWE1_T_denit_62_9 species=Thiothrix nivea genus=Thiothrix taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_915_29
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30521..31108
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003738B0E
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_915_30
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31279..32943
DNA (1665bp) protein (555aa)
acetolactate synthase, large subunit (EC:2.2.1.6)
acetolactate synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037CACE5
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying items 1-30 of 39 in total

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