ggKbase home page

RTP_02272018_0_2um_Hydrogenophilales_62_27

In projects: RTP_02272018_0_2um  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Taxonomy override: Betaproteobacteria

Displaying items 51-100 of 110 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_02272018_0_2um_scaffold_2178
Species: GWE1_Thiobacillus_62_9_curated (50%)
20 8362 bp 57.37 28.95 94.97
RTP_02272018_0_2um_scaffold_798
Order: Hydrogenophilales (57.89%)
19 23510 bp 62.11 28.14 87.40
RTP_02272018_0_2um_scaffold_1044
Order: Hydrogenophilales (73.68%)
19 17929 bp 63.90 24.20 92.70
RTP_02272018_0_2um_scaffold_1929
Order: Hydrogenophilales (52.94%)
17 9315 bp 59.10 34.67 90.43
RTP_02272018_0_2um_scaffold_1320
Order: Hydrogenophilales (93.75%)
16 14192 bp 64.15 25.03 93.06
RTP_02272018_0_2um_scaffold_1858
Species: Thiobacillus denitrificans (53.85%)
13 9674 bp 68.09 21.92 95.07
RTP_02272018_0_2um_scaffold_1473
Order: Hydrogenophilales (61.54%)
13 12532 bp 62.33 24.59 95.78
RTP_02272018_0_2um_scaffold_1582
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
12 13895 bp 62.92 38.53 96.14
RTP_02272018_0_2um_scaffold_1377
Species: GWE1_Thiobacillus_62_9_curated (50%)
12 13454 bp 60.09 53.69 91.14
RTP_02272018_0_2um_scaffold_1285
Order: Hydrogenophilales (66.67%)
12 14627 bp 61.53 24.18 94.86
RTP_02272018_0_2um_scaffold_1878
Order: Hydrogenophilales (81.82%)
11 9581 bp 61.12 27.38 87.33
RTP_02272018_0_2um_scaffold_2272
Order: Hydrogenophilales (70%)
10 8038 bp 63.11 27.08 93.83
RTP_02272018_0_2um_scaffold_3150
Order: Hydrogenophilales (90%)
10 5671 bp 60.52 53.43 77.53
RTP_02272018_0_2um_scaffold_1791
Order: Hydrogenophilales (80%)
10 10115 bp 63.55 26.00 96.29
RTP_02272018_0_2um_scaffold_3127
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (55.56%)
9 5725 bp 57.94 22.61 95.11
RTP_02272018_0_2um_scaffold_3036
Species: GWE1_Thiobacillus_62_9_curated (50%)
8 5890 bp 63.92 24.50 86.59
RTP_02272018_0_2um_scaffold_1980
Order: Hydrogenophilales (62.5%)
8 9078 bp 62.36 22.04 75.58
RTP_02272018_0_2um_scaffold_4398
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
8 4046 bp 62.09 49.35 92.17
RTP_02272018_0_2um_scaffold_3062
Order: Hydrogenophilales (85.71%)
7 5842 bp 65.70 23.24 93.72
RTP_02272018_0_2um_scaffold_2063
Order: Hydrogenophilales (71.43%)
7 8775 bp 64.85 45.47 93.44
RTP_02272018_0_2um_scaffold_1942
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (57.14%)
7 9222 bp 62.69 36.86 83.25
RTP_02272018_0_2um_scaffold_3445
Order: Hydrogenophilales (57.14%)
7 5185 bp 61.47 22.10 84.19
RTP_02272018_0_2um_scaffold_2690
Order: Hydrogenophilales (71.43%)
7 6761 bp 62.89 24.32 90.56
RTP_02272018_0_2um_scaffold_3026
Order: Hydrogenophilales (71.43%)
7 5900 bp 61.34 30.31 83.90
RTP_02272018_0_2um_scaffold_2306
Species: GWE1_Thiobacillus_62_9_curated (50%)
6 7944 bp 61.20 24.38 86.03
RTP_02272018_0_2um_scaffold_2961
Order: Hydrogenophilales (100%)
6 6071 bp 61.13 25.05 94.68
RTP_02272018_0_2um_scaffold_3393
Order: Hydrogenophilales (100%)
5 5273 bp 60.67 23.78 94.50
RTP_02272018_0_2um_scaffold_4663
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (60%)
5 3792 bp 65.37 44.26 97.63
RTP_02272018_0_2um_scaffold_8910
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (60%)
5 1912 bp 56.38 40.72 79.86
RTP_02272018_0_2um_scaffold_3524
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 5084 bp 63.10 24.02 99.08
RTP_02272018_0_2um_scaffold_6605
Order: Hydrogenophilales (75%)
4 2632 bp 63.91 21.94 89.25
RTP_02272018_0_2um_scaffold_11385
Species: GWE1_Thiobacillus_62_9_curated (100%)
4 1495 bp 63.21 46.76 94.11
RTP_02272018_0_2um_scaffold_7451
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
4 2310 bp 59.48 22.79 85.97
RTP_02272018_0_2um_scaffold_4186
Species: Thiobacillus denitrificans (50%)
4 4252 bp 58.73 22.65 96.03
RTP_02272018_0_2um_scaffold_3025
Species: GWE1_Thiobacillus_62_9_curated (50%)
4 5903 bp 59.16 22.29 94.53
RTP_02272018_0_2um_scaffold_7280
Order: Hydrogenophilales (66.67%)
3 2377 bp 58.06 26.19 96.80
RTP_02272018_0_2um_scaffold_5073
Order: Hydrogenophilales (100%)
3 3472 bp 59.82 22.72 77.85
RTP_02272018_0_2um_scaffold_16516
Order: Hydrogenophilales (66.67%)
3 1029 bp 64.43 20.99 75.51
RTP_02272018_0_2um_scaffold_6064
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 2887 bp 62.21 26.03 78.46
RTP_02272018_0_2um_scaffold_5181
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 3393 bp 57.32 27.23 91.60
RTP_02272018_0_2um_scaffold_2946
Species: Thiobacillus denitrificans (66.67%)
3 6127 bp 64.55 28.55 92.54
RTP_02272018_0_2um_scaffold_10679
Species: Thiobacillus denitrificans (100%)
3 2583 bp 62.80 55.34 102.44
RTP_02272018_0_2um_scaffold_12427
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1371 bp 59.66 40.59 94.31
RTP_02272018_0_2um_scaffold_15161
Species: Thiobacillus denitrificans (50%)
2 1120 bp 58.66 36.83 89.73
RTP_02272018_0_2um_scaffold_10469
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1623 bp 56.50 22.92 75.60
RTP_02272018_0_2um_scaffold_10730
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
2 1590 bp 55.53 23.21 92.08
RTP_02272018_0_2um_scaffold_13727
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1239 bp 57.71 42.98 99.03
RTP_02272018_0_2um_scaffold_8340
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
2 2046 bp 57.14 27.35 76.98
RTP_02272018_0_2um_scaffold_8351
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 2043 bp 66.32 19.31 100.44
RTP_02272018_0_2um_scaffold_14923
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1138 bp 59.05 39.15 95.69
Displaying items 51-100 of 110 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.