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RTP_02272018_0_2um_Hydrogenophilales_62_27

In projects: RTP_02272018_0_2um  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Taxonomy override: Betaproteobacteria

Displaying items 1-50 of 110 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_02272018_0_2um_scaffold_13766
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1236 bp 65.94 58.62 41.02
RTP_02272018_0_2um_scaffold_16516
Order: Hydrogenophilales (66.67%)
3 1029 bp 64.43 20.99 75.51
RTP_02272018_0_2um_scaffold_1980
Order: Hydrogenophilales (62.5%)
8 9078 bp 62.36 22.04 75.58
RTP_02272018_0_2um_scaffold_10469
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1623 bp 56.50 22.92 75.60
RTP_02272018_0_2um_scaffold_8340
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
2 2046 bp 57.14 27.35 76.98
RTP_02272018_0_2um_scaffold_3150
Order: Hydrogenophilales (90%)
10 5671 bp 60.52 53.43 77.53
RTP_02272018_0_2um_scaffold_5073
Order: Hydrogenophilales (100%)
3 3472 bp 59.82 22.72 77.85
RTP_02272018_0_2um_scaffold_6064
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 2887 bp 62.21 26.03 78.46
RTP_02272018_0_2um_scaffold_1010
Order: Hydrogenophilales (50%)
24 18515 bp 60.77 25.80 79.10
RTP_02272018_0_2um_scaffold_8910
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (60%)
5 1912 bp 56.38 40.72 79.86
RTP_02272018_0_2um_scaffold_1942
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (57.14%)
7 9222 bp 62.69 36.86 83.25
RTP_02272018_0_2um_scaffold_814
Order: Hydrogenophilales (76.19%)
21 23115 bp 61.19 26.75 83.78
RTP_02272018_0_2um_scaffold_3026
Order: Hydrogenophilales (71.43%)
7 5900 bp 61.34 30.31 83.90
RTP_02272018_0_2um_scaffold_3445
Order: Hydrogenophilales (57.14%)
7 5185 bp 61.47 22.10 84.19
RTP_02272018_0_2um_scaffold_13072
Species: GWE1_Thiobacillus_62_9_curated (100%)
2 1300 bp 59.38 30.12 85.38
RTP_02272018_0_2um_scaffold_7451
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
4 2310 bp 59.48 22.79 85.97
RTP_02272018_0_2um_scaffold_2306
Species: GWE1_Thiobacillus_62_9_curated (50%)
6 7944 bp 61.20 24.38 86.03
RTP_02272018_0_2um_scaffold_688
Order: Hydrogenophilales (76.19%)
21 26680 bp 63.75 26.33 86.30
RTP_02272018_0_2um_scaffold_851
Order: Hydrogenophilales (69.57%)
23 22255 bp 63.00 24.92 86.40
RTP_02272018_0_2um_scaffold_3036
Species: GWE1_Thiobacillus_62_9_curated (50%)
8 5890 bp 63.92 24.50 86.59
RTP_02272018_0_2um_scaffold_463
Order: Hydrogenophilales (73.33%)
45 38291 bp 62.28 28.01 86.98
RTP_02272018_0_2um_scaffold_342
Order: Hydrogenophilales (79.17%)
48 48200 bp 61.21 33.05 87.05
RTP_02272018_0_2um_scaffold_750
Order: Hydrogenophilales (54.17%)
24 24599 bp 62.17 23.52 87.27
RTP_02272018_0_2um_scaffold_1878
Order: Hydrogenophilales (81.82%)
11 9581 bp 61.12 27.38 87.33
RTP_02272018_0_2um_scaffold_798
Order: Hydrogenophilales (57.89%)
19 23510 bp 62.11 28.14 87.40
RTP_02272018_0_2um_scaffold_598
Order: Hydrogenophilales (62.5%)
32 30423 bp 60.52 25.24 87.46
RTP_02272018_0_2um_scaffold_264
Order: Hydrogenophilales (84.21%)
57 56557 bp 61.76 27.56 87.63
RTP_02272018_0_2um_scaffold_567
Order: Hydrogenophilales (69.23%)
26 31532 bp 61.44 29.27 87.69
RTP_02272018_0_2um_scaffold_915
Order: Hydrogenophilales (53.85%)
39 40460 bp 62.31 29.04 87.81
RTP_02272018_0_2um_scaffold_669
Order: Hydrogenophilales (50%)
20 27290 bp 62.00 24.82 88.11
RTP_02272018_0_2um_scaffold_805
Order: Hydrogenophilales (88.46%)
26 23441 bp 61.19 42.41 88.49
RTP_02272018_0_2um_scaffold_864
Order: Hydrogenophilales (65.38%)
26 21810 bp 61.14 22.96 88.55
RTP_02272018_0_2um_scaffold_639
Species: GWE1_Thiobacillus_62_9_curated (51.43%)
35 38401 bp 61.31 26.96 88.60
RTP_02272018_0_2um_scaffold_446
Order: Hydrogenophilales (91.89%)
37 39475 bp 60.75 24.17 88.67
RTP_02272018_0_2um_scaffold_277
Order: Hydrogenophilales (80.95%)
63 55277 bp 61.96 27.42 89.09
RTP_02272018_0_2um_scaffold_502
Order: Hydrogenophilales (69.23%)
39 35526 bp 59.51 24.46 89.12
RTP_02272018_0_2um_scaffold_6605
Order: Hydrogenophilales (75%)
4 2632 bp 63.91 21.94 89.25
RTP_02272018_0_2um_scaffold_263
Order: Hydrogenophilales (72.73%)
55 56696 bp 63.45 26.09 89.39
RTP_02272018_0_2um_scaffold_432
Order: Hydrogenophilales (68.42%)
38 40024 bp 61.48 27.31 89.56
RTP_02272018_0_2um_scaffold_118
Order: Hydrogenophilales (83.15%)
89 96541 bp 62.74 24.95 89.63
RTP_02272018_0_2um_scaffold_492
Order: Hydrogenophilales (58.14%)
43 36248 bp 60.90 25.22 89.70
RTP_02272018_0_2um_scaffold_15161
Species: Thiobacillus denitrificans (50%)
2 1120 bp 58.66 36.83 89.73
RTP_02272018_0_2um_scaffold_300
Order: Hydrogenophilales (78.46%)
65 64118 bp 63.19 27.05 89.86
RTP_02272018_0_2um_scaffold_344
Order: Hydrogenophilales (79.01%)
81 75447 bp 62.03 28.35 90.01
RTP_02272018_0_2um_scaffold_196
Order: Hydrogenophilales (91.46%)
82 70802 bp 63.08 27.35 90.19
RTP_02272018_0_2um_scaffold_1021
Order: Hydrogenophilales (100%)
26 18408 bp 60.60 24.21 90.37
RTP_02272018_0_2um_scaffold_664
Order: Hydrogenophilales (53.49%)
43 45171 bp 63.51 26.26 90.43
RTP_02272018_0_2um_scaffold_380
Order: Hydrogenophilales (77.55%)
49 44358 bp 61.79 24.24 90.43
RTP_02272018_0_2um_scaffold_1929
Order: Hydrogenophilales (52.94%)
17 9315 bp 59.10 34.67 90.43
RTP_02272018_0_2um_scaffold_2690
Order: Hydrogenophilales (71.43%)
7 6761 bp 62.89 24.32 90.56
Displaying items 1-50 of 110 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.