ggKbase home page

RTP_02272018_0_2um_scaffold_187

Search features with annotation key words

Displaying items 1-30 of 96 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_187_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(253..1644)
DNA (1392bp) protein (464aa)
undecaprenyl-phosphate glucose phosphotransferase (EC:2.7.8.-)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003814F6B
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_187_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2071..2448)
DNA (378bp) protein (126aa)
hypothetical protein id=12496198 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_187_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3010..3840)
DNA (831bp) protein (277aa)
Putative uncharacterized protein id=1349294 bin=GWE1_T_denit_62_9 species=Azospira oryzae genus=Azospira taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_187_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4042..5067)
DNA (1026bp) protein (342aa)
Putative NAD/FAD-dependent oxidoreductase id=1319190 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
NAD/FAD-dependent oxidoreductase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_187_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5248..5676)
DNA (429bp) protein (143aa)
hypothetical protein id=12494587 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_187_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5683..6972)
DNA (1290bp) protein (430aa)
putative integral membrane protein; K06902 MFS transporter, UMF1 family id=12494588 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
integral membrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_187_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6969..8768)
DNA (1800bp) protein (600aa)
ABC-type transport system ATPase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJD8_THIDA
ABC-type transport system ATPase {ECO:0000313|EMBL:AAZ97226.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
ABC-type transport system ATPase
RTP_02272018_0_2um_scaffold_187_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8813..9229
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037E22B7
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_187_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9219..10349
DNA (1131bp) protein (377aa)
succinyl-diaminopimelate desuccinylase (EC:3.5.1.18)
succinyl-diaminopimelate desuccinylase n=1 Tax=Thiobacillus thioparus RepID=UPI00036F8289
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_187_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10365..11261
DNA (897bp) protein (299aa)
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (EC:2.1.1.72)
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00036A5A6D
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_187_11
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11266..12261)
DNA (996bp) protein (332aa)
D-lactate dehydrogenase (EC:1.1.1.28)
D-3-phosphoglycerate dehydrogenase id=12497121 bin=THIO_MID species=Roseomonas sp. B5 genus=Roseomonas taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
D-lactate dehydrogenase {ECO:0000313|EMBL:EIT70964.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
RTP_02272018_0_2um_scaffold_187_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12364..13029
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037798DE
CmpX protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_187_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13127..14017)
DNA (891bp) protein (297aa)
ribosomal large subunit pseudouridine synthase B (EC:5.4.99.-); K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] id=12493951 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
ribosomal large subunit pseudouridine synthase B (EC:5.4.99.-)
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_187_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14020..14715)
DNA (696bp) protein (232aa)
chromosome segregation protein ScpB n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C0ACC
condensin subunit ScpB
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_187_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14696..15523)
DNA (828bp) protein (276aa)
segregation and condensation protein A n=1 Tax=Thiobacillus thioparus RepID=UPI000379C683
condensin subunit ScpA
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_187_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15562..17967)
DNA (2406bp) protein (802aa)
PIM1 peptidase (EC:3.4.21.53)
Lon protease n=1 Tax=Thiobacillus denitrificans RepID=UPI000368420C
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_187_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18004..18780)
DNA (777bp) protein (259aa)
flagellar motor protein MotD; K02557 chemotaxis protein MotB id=12493964 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
flagellar motor protein MotD
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_187_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18781..19518)
DNA (738bp) protein (246aa)
flagellar motor protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00038245BC
motC; flagellar motor protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_187_19
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19500..20240)
DNA (741bp) protein (247aa)
RNA polymerase sigma factor FliA n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJF9_THIDA
RNA polymerase sigma-70 factor
RNA polymerase sigma factor FliA {ECO:0000256|HAMAP-Rule:MF_00962}; RNA polymerase sigma factor for flagellar operon {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma F {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma-28 {ECO:0000256|HAMAP-Rule:MF_00962}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_187_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20244..21113)
DNA (870bp) protein (290aa)
Putative flagellar biosynthesis protein FlhG id=1357064 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
flagellar biosynthesis protein FlhG
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_187_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21118..22407)
DNA (1290bp) protein (430aa)
flagellar biosynthesis regulator FlhF n=1 Tax=Thiobacillus thioparus RepID=UPI00037C9F8B
flhF; flagellar biosynthesis regulator FlhF
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_187_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22404..24482)
DNA (2079bp) protein (693aa)
flagellar biosynthesis protein FlhA n=1 Tax=Thiobacillus denitrificans RepID=UPI00037DF65E
flagellar biosynthesis protein FlhA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_187_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24479..25621)
DNA (1143bp) protein (381aa)
flagellar biosynthesis protein FlhB n=1 Tax=Thiobacillus denitrificans RepID=UPI00036ADE0A
flagellar biosynthetic protein FlhB
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_187_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25858..26787)
DNA (930bp) protein (310aa)
motB; flagellar motor protein MotB; K02557 chemotaxis protein MotB id=12497140 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
motB; flagellar motor protein MotB
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_187_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26838..27698)
DNA (861bp) protein (287aa)
Probable chemotaxis transmembrane protein MotA id=1332263 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
flagellar motor protein MotA
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_187_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27854..28612)
DNA (759bp) protein (253aa)
Putative uncharacterized protein id=1332264 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_187_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28636..29190)
DNA (555bp) protein (185aa)
transcriptional regulator n=1 Tax=Thiobacillus thioparus RepID=UPI00036B8818
transcriptional activator FlhC
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_187_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29246..29563)
DNA (318bp) protein (106aa)
flagellar transcriptional regulator FlhD n=1 Tax=Thiobacillus denitrificans RepID=UPI00037D9751
transcriptional activator FlhD
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_187_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29867..31288)
DNA (1422bp) protein (474aa)
mannose-1-phosphate guanylyltransferase (EC:2.7.7.22); K16011 mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] id=12493985 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
mannose-1-phosphate guanylyltransferase (EC:2.7.7.22)
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_187_30
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31811..32356)
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003708CD7
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying items 1-30 of 96 in total

View Taxonomy