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RTP_02272018_0_2um_scaffold_258

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Displaying items 1-30 of 184 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_258_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23..1024)
DNA (1002bp) protein (334aa)
protease n=1 Tax=Thiobacillus thioparus RepID=UPI000372848E
protease
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_258_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1014..2021)
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C6A09
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_258_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2018..3139)
DNA (1122bp) protein (374aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000369B318
2-nitropropane dioxygenase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_258_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3363..3968
DNA (606bp) protein (202aa)
riboflavin synthase subunit alpha (EC:2.5.1.9)
Lumazine-binding protein id=1329922 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_258_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3985..5085
DNA (1101bp) protein (367aa)
bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein (EC:3.5.4.25 4.1.2.-)
3,4-dihydroxy-2-butanone 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00180}; Short=DHBP synthase {ECO:0000256|HAMAP-Rule:MF_00180};; EC=4.1.99.12 {ECO:0000256|HAMAP-Rule:MF_00180};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
3,4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Thiobacillus thioparus RepID=UPI000360BCCA
RTP_02272018_0_2um_scaffold_258_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5158..5625
DNA (468bp) protein (156aa)
ribH; 6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035D9146
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_258_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5627..6067
DNA (441bp) protein (147aa)
nitrogen utilization protein B n=1 Tax=Thiobacillus thioparus RepID=UPI00038186EE
NusB antitermination factor
N utilization substance protein B homolog {ECO:0000255|HAMAP-Rule:MF_00073}; Short=Protein NusB {ECO:0000255|HAMAP-Rule:MF_00073};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_258_8
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6127..7095
DNA (969bp) protein (323aa)
thiamine-monophosphate kinase (EC:2.7.4.16)
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {ECO:0000256|HAMAP-Rule:MF_02128};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
thiamine monophosphate kinase n=1 Tax=Thiobacillus denitrificans RepID=UPI000365663B
RTP_02272018_0_2um_scaffold_258_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7076..7564
DNA (489bp) protein (163aa)
phosphatidylglycerophosphatase (EC:3.1.3.27)
Phosphatidylglycerophosphatase A id=1371379 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_258_10
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7552..8070
DNA (519bp) protein (173aa)
competence damage-inducible protein A n=1 Tax=Thiobacillus thioparus RepID=UPI00036EE38B
CinA protein
CinA protein {ECO:0000313|EMBL:AAZ98148.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_258_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8174..9256)
DNA (1083bp) protein (361aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003780B4D
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_258_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9258..10307
DNA (1050bp) protein (350aa)
Protein RecA id=1371376 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
recA; recombinase A
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_258_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10276..10746
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000362BB10
regulatory protein RecX
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_258_14
Xanthomonas vasicola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10964..11377)
DNA (414bp) protein (138aa)
fimbrial protein n=1 Tax=Pseudomonas sp. S9 RepID=UPI0002556B61
Fimbrial protein {ECO:0000313|EMBL:KGR58436.1}; TaxID=56459 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vasicola.;"
fimbrial protein
RTP_02272018_0_2um_scaffold_258_15
Xanthomonas vasicola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11995..12408)
DNA (414bp) protein (138aa)
fimbrial protein n=1 Tax=Xanthomonas axonopodis RepID=UPI000308DAF2
Fimbrial protein {ECO:0000313|EMBL:KGR58436.1}; TaxID=56459 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vasicola.;"
fimbrial protein
RTP_02272018_0_2um_scaffold_258_16
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12731..13030
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B6AE14
hypothetical protein
Tax=RBG_16_Gammaproteobacteria_57_12_curated
RTP_02272018_0_2um_scaffold_258_17
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13005..13340
DNA (336bp) protein (112aa)
XRE family transcriptional regulator n=1 Tax=Thauera phenylacetica B4P RepID=N6ZUK9_9RHOO
transcriptional regulator
Tax=RBG_16_Gammaproteobacteria_57_12_curated
RTP_02272018_0_2um_scaffold_258_18
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13573..13989)
DNA (417bp) protein (139aa)
Ribonuclease VapC n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BTV9_9GAMM
nucleic acid-binding protein, contains PIN domain
Tax=CG_Beta_01
RTP_02272018_0_2um_scaffold_258_19
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13989..14219)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BTW0_9GAMM
hypothetical protein
Tax=CG_Beta_01
RTP_02272018_0_2um_scaffold_258_20
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14490..14816)
DNA (327bp) protein (109aa)
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JLC6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:CDH43229.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_258_21
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14813..15034)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Thauera sp. 27 RepID=N6WYT6_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:CDS47909.1}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_258_trna_1
unknown

Not on your lists

comp(15223..15295)
DNA (73bp)
transferRNA Lys
RTP_02272018_0_2um_scaffold_258_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15437..16618)
DNA (1182bp) protein (394aa)
membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000381F4AF
transmembrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_258_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16874..17602)
DNA (729bp) protein (243aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003761BE3
ExsB ATPase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_258_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17599..18498)
DNA (900bp) protein (300aa)
7-carboxy-7-deazaguanine synthase n=1 Tax=Thiobacillus thioparus RepID=UPI0003816A55
radical activating enzyme
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_258_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18504..19292)
DNA (789bp) protein (263aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003610CBD
TPR repeat-containing protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_258_26
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19338..19916)
DNA (579bp) protein (193aa)
peptidoglycan-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036427C5
outer membrane protein, porin-associated lipoprotein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_258_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20096..21370)
DNA (1275bp) protein (425aa)
tolB; translocation protein TolB; K03641 TolB protein id=12496616 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
tolB; translocation protein TolB
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_258_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21496..22365)
DNA (870bp) protein (290aa)
Putative TonB protein id=1336260 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
TonB protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_258_29
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22362..22772)
DNA (411bp) protein (137aa)
biopolymer transporter ExbD n=1 Tax=Thiobacillus denitrificans RepID=UPI0003725F1A
biopolymer transport protein ExbD/TolR
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying items 1-30 of 184 in total

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