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RTP_02272018_0_2um_scaffold_287

Search features with annotation key words

Displaying items 1-30 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_287_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..800
DNA (798bp) protein (266aa)
Heavy metal efflux pump CzcA n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJ81_THIDA
heavy metal efflux pump CzcA
Heavy metal efflux pump CzcA {ECO:0000313|EMBL:AAZ97286.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_287_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

888..1196
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003743809
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_287_3
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1323..1937)
DNA (615bp) protein (205aa)
Cold-shock DNA-binding domain protein n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AB98_COLFT
cold-shock DNA-binding domain-containing protein
Cold-shock DNA-binding domain protein {ECO:0000313|EMBL:AEK61304.1}; TaxID=1005048 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas fungivorans (strain Ter331).;"
RTP_02272018_0_2um_scaffold_287_4
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2056..2511)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. CF316 RepID=J0KMF3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJE52383.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_287_5
Methylomonas methanica, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2548..3435)
DNA (888bp) protein (296aa)
Quinone oxidoreductase, YhdH/YhfP family n=1 Tax=Methylomonas methanica (strain MC09) RepID=G0A5P6_METMM
YhdH/YhfP family quinone oxidoreductase
Quinone oxidoreductase, YhdH/YhfP family {ECO:0000313|EMBL:AEG02903.1}; TaxID=857087 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas methanica (strain MC09).;"
RTP_02272018_0_2um_scaffold_287_6
unknown

Not on your lists

3713..3928
DNA (216bp) protein (72aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_287_7
Synechococcus sp. KORDI-100, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

3919..4548
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Synechococcus sp. RS9917 RepID=A3Z3K6_9SYNE
dioxygenase
Dioxygenase {ECO:0000313|EMBL:AII41810.1}; TaxID=1280380 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp. KORDI-100.;"
RTP_02272018_0_2um_scaffold_287_8
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4820..6097
DNA (1278bp) protein (426aa)
ATPase-like protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VT60_POLNA
ATPase-like protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
RTP_02272018_0_2um_scaffold_287_9
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6103..6732
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VT59_POLNA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM38837.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
RTP_02272018_0_2um_scaffold_287_10
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6890..8788)
DNA (1899bp) protein (633aa)
heat shock protein 90 n=1 Tax=Thiobacillus denitrificans RepID=UPI00037042E5
heat shock protein 90
Chaperone protein HtpG {ECO:0000255|HAMAP-Rule:MF_00505}; Heat shock protein HtpG {ECO:0000255|HAMAP-Rule:MF_00505}; High temperature protein G {ECO:0000255|HAMAP-Rule:MF_00505}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_287_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9080..10063)
DNA (984bp) protein (328aa)
Putative uncharacterized protein id=1341100 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_287_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10060..11085)
DNA (1026bp) protein (342aa)
Putative uncharacterized protein id=1341099 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_287_13
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11147..11938)
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037F89AE
outer membrane protein
Outer membrane protein {ECO:0000313|EMBL:AAZ98748.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_287_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12139..14196)
DNA (2058bp) protein (686aa)
polyphosphate kinase (EC:2.7.4.1)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00347}; Polyphosphoric acid kinase {ECO:0000256|HAMAP-Rule:MF_00347}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
polyphosphate kinase n=1 Tax=Thiobacillus thioparus RepID=UPI000362B044
RTP_02272018_0_2um_scaffold_287_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14276..15787
DNA (1512bp) protein (504aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037A0594
adenylate cyclase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_287_16
Methylophilaceae bacterium 11, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15951..16556
DNA (606bp) protein (202aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003690B53
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:EUJ10586.1}; TaxID=1101195 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophilaceae bacterium 11.;"
winged helix family two component transcriptional regulator
RTP_02272018_0_2um_scaffold_287_17
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16787..17233
DNA (447bp) protein (149aa)
phosphohistidine phosphatase n=1 Tax=Thiobacillus thioparus RepID=UPI00036C0579
phosphohistidine phosphatase, SixA
Phosphohistidine Phosphatase, SixA {ECO:0000313|EMBL:AAZ97040.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_287_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17309..18667
DNA (1359bp) protein (453aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000375CDF4
flagellar biosynthesis/type III secretory pathway lipoprotein FliF
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_287_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18664..19629
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003764A92
flagellar motor switch protein FliG
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_287_20
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19626..20240
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003769EBF
flagellar assembly protein FliH
Flagellar assembly protein FliH {ECO:0000313|EMBL:AAZ97043.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_287_21
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20240..21634
DNA (1395bp) protein (465aa)
flagella ATPase FliI (EC:3.6.3.15)
Flagella ATPase FliI {ECO:0000313|EMBL:AAZ97044.1}; EC=3.6.3.15 {ECO:0000313|EMBL:AAZ97044.1};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
ATP synthase n=1 Tax=Thiobacillus thioparus RepID=UPI00037BC7FC
RTP_02272018_0_2um_scaffold_287_22
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21631..22086
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035C7F22
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97045.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_287_23
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22086..22550
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000381CEF2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97046.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_287_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22543..22932
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037B8AD5
flagellar protein FliO
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_287_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22929..23660
DNA (732bp) protein (244aa)
flagellar biosynthesis protein FliP n=1 Tax=Thiobacillus thioparus RepID=UPI00035E84E0
fliP; flagellar biosynthesis protein FliP
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_287_26
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23660..23914
DNA (255bp) protein (85aa)
flagellar biosynthesis protein FliQ n=1 Tax=Thiobacillus thioparus RepID=UPI00037AAAAF
flagellar biosynthetic protein FliQ
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_287_27
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24029..24778
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037E213C
flagellar biosynthetic fliR transmembrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_287_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24898..25788
DNA (891bp) protein (297aa)
dapA; dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=DAPA_THIDA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_287_29
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25849..26949
DNA (1101bp) protein (367aa)
NlpBDapX family lipoprotein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036CCE4D
lipoprotein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_287_30
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26966..27724
DNA (759bp) protein (253aa)
beta-lactamase n=1 Tax=Thiobacillus thioparus RepID=UPI00037CB63D
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying items 1-30 of 68 in total

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