ggKbase home page

RTP_02272018_0_2um_scaffold_428

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_428_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2..160)
DNA (159bp) protein (53aa)
rpmB; 50S ribosomal protein L28
rpmB; 50S ribosomal protein L28; K02902 large subunit ribosomal protein L28 id=12496288 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_428_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(271..945)
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000382E708
DNA repair protein RadC
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_428_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

981..2186
DNA (1206bp) protein (402aa)
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase (EC:4.1.1.36 6.3.2.5)
phosphopantothenate synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003701BD5
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_428_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2203..2649
DNA (447bp) protein (149aa)
dut; deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
deoxyuridine 5''''-triphosphate nucleotidohydrolase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036F790A
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_428_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2835..4286
DNA (1452bp) protein (484aa)
Putative diguanylate cyclase (GGDEF domain) id=1329468 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
diguanylate cyclase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_428_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4270..5811)
DNA (1542bp) protein (514aa)
Apolipoprotein N-acyltransferase id=1329469 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
apolipoprotein N-acyltransferase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_428_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5808..7088)
DNA (1281bp) protein (427aa)
dihydroorotase (EC:3.5.2.3)
dihydroorotase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036F267B
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_428_8
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7085..7585)
DNA (501bp) protein (167aa)
pyrB; aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase {ECO:0000255|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000255|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000255|HAMAP-Rule:MF_00001}; Short=ATCase {ECO:0000255|HAMAP-Rule:MF_00001};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
aspartate carbamoyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036175A0
RTP_02272018_0_2um_scaffold_428_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7796..8290)
DNA (495bp) protein (165aa)
bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase (EC:2.4.2.9)
uracil phosphoribosyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00035F1DAF
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_428_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8271..8708)
DNA (438bp) protein (146aa)
Holliday junction resolvase n=1 Tax=Thiobacillus thioparus RepID=UPI0003809387
Holliday junction resolvase-like protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_428_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8962..9522)
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036E31AB
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_428_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9607..11049
DNA (1443bp) protein (481aa)
deoxyribodipyrimidine photo-lyase (EC:4.1.99.3)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035CF079
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_428_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11136..12347)
DNA (1212bp) protein (404aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037B4485
metal dependent phosphohydrolase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_428_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12514..13527)
DNA (1014bp) protein (338aa)
cbbF; fructose-1,6-bisphosphatase (EC:3.1.3.11)
fructose-1 6-bisphosphatase n=1 Tax=Thiobacillus thioparus RepID=UPI0003775DD3
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_428_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13800..14636)
DNA (837bp) protein (279aa)
TonB-like protein id=1357139 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
TonB-like protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_428_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14720..16588)
DNA (1869bp) protein (623aa)
ribonuclease II n=1 Tax=Thiobacillus thioparus RepID=UPI00037534DA
ribonuclease II
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_428_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16594..17151)
DNA (558bp) protein (186aa)
Esterase id=1340114 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
esterase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_428_18
GWC2_Planctomycetes_45_44_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(17623..18156)
DNA (534bp) protein (178aa)
Uncharacterized protein id=4442558 bin=GWC2_Planctomycetes_45_44 species=Vibrio caribbenthicus genus=Vibrio taxon_order=Vibrionales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
hypothetical protein
Tax=GWC2_Planctomycetes_45_44_curated
RTP_02272018_0_2um_scaffold_428_19
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18600..20024)
DNA (1425bp) protein (475aa)
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase n=1 Tax=Thiobacillus thioparus RepID=UPI0003743589
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase {ECO:0000313|EMBL:AAZ98525.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_428_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20077..21999)
DNA (1923bp) protein (641aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035F7AD2
periplasmic sensor hybrid histidine kinase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_428_21
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22006..22641)
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000367D577
LuxR family transcriptional regulator
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_428_22
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22781..23263)
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036A6264
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98522.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_428_23
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23357..24280
DNA (924bp) protein (308aa)
porphobilinogen deaminase (EC:2.5.1.61)
Porphobilinogen deaminase {ECO:0000255|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000255|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000255|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000255|HAMAP-Rule:MF_00260}; Short=HMBS {ECO:0000255|HAMAP-Rule:MF_00260};; Pre-uroporphyrinogen synthase {ECO:0000255|HAMAP-Rule:MF_00260}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
porphobilinogen deaminase n=1 Tax=Thiobacillus thioparus RepID=UPI00036D392C
RTP_02272018_0_2um_scaffold_428_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24277..25044
DNA (768bp) protein (256aa)
uroporphyrinogen-III synthase (EC:4.2.1.75)
Uroporphyrinogen-III synthase id=1343295 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_428_25
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25041..26114
DNA (1074bp) protein (358aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003619946
uroporphyrin-III C-methyltransferase
Uroporphyrin-III C-methyltransferase {ECO:0000313|EMBL:AAZ98519.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_428_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26114..27289
DNA (1176bp) protein (392aa)
Putative uncharacterized protein id=1343293 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
porphyrin biosynthesis protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_428_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27399..27914
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036EF080
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_428_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27973..29004)
DNA (1032bp) protein (344aa)
NAD(P)H-flavin reductase id=1343291 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
CDP-6-deoxy-delta-3,4-glucoseen reductase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_428_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29100..29987
DNA (888bp) protein (296aa)
Putative oxidoreductase protein id=1343290 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
oxidoreductase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_428_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29994..30401)
DNA (408bp) protein (136aa)
FxsA protein id=1343289 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
FxsA protein
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 43 in total

View Taxonomy