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RTP_02272018_0_2um_scaffold_610

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_610_1
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..112)
DNA (111bp) protein (37aa)
Putative uncharacterized protein n=1 Tax=Thiocapsa marina 5811 RepID=F9U998_9GAMM
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
RTP_02272018_0_2um_scaffold_610_2
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(216..815)
DNA (600bp) protein (200aa)
ThiJ/PfpI family protein n=1 Tax=Burkholderia cenocepacia KC-01 RepID=V5A5D1_9BURK
AraC family transcriptional regulator {ECO:0000313|EMBL:KER70804.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
ThiJ/PfpI domain-containing protein
RTP_02272018_0_2um_scaffold_610_3
unknown

Not on your lists

comp(930..1292)
DNA (363bp) protein (121aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_610_4
Methylomicrobium alcaliphilum, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1499..1768)
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI0003712D0C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCE22955.1}; TaxID=1091494 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM; B-2133 / 20Z).;"
RTP_02272018_0_2um_scaffold_610_5
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1761..2027)
DNA (267bp) protein (89aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI00035FD17D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHE57275.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
RTP_02272018_0_2um_scaffold_610_6

Not on your lists

2407..2769
DNA (363bp) protein (121aa)
IntI (Fragment) n=1 Tax=uncultured bacterium RepID=C6GBZ1_9BACT
IntI {ECO:0000313|EMBL:ACS73587.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
integron integrase
RTP_02272018_0_2um_scaffold_610_7
Candidatus Accumulibacter sp. BA-91, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2845..3012
DNA (168bp) protein (56aa)
integrase n=1 Tax=Methylobacter marinus RepID=UPI00037D5276
integrase
Tyrosine recombinase XerD {ECO:0000313|EMBL:KFB71108.1}; TaxID=1454002 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-91.;"
RTP_02272018_0_2um_scaffold_610_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3113..4036
DNA (924bp) protein (308aa)
Putative oxidoreductase protein id=1326609 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
oxidoreductase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_610_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4036..4728
DNA (693bp) protein (231aa)
Conserved hypothetical membrane protein id=1326608 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_610_10
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4744..5121)
DNA (378bp) protein (126aa)
PilT domain-containing protein n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GLF9_THISH
PilT domain-containing protein
PilT domain-containing protein {ECO:0000313|EMBL:ACL73514.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
RTP_02272018_0_2um_scaffold_610_11

Not on your lists

comp(5118..5324)
DNA (207bp) protein (69aa)
Marine sediment metagenome DNA, contig: S01H1_S29495 {ECO:0000313|EMBL:GAG34384.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
AbrB family transcriptional regulator id=8267199 bin=CD_OP8_4m species=Thioalkalivibrio sp. AKL17 genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
AbrB family transcriptional regulator
RTP_02272018_0_2um_scaffold_610_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5382..5852
DNA (471bp) protein (157aa)
tRNA-adenosine deaminase (EC:3.5.4.-)
CRISPR-associated protein Csn1 n=1 Tax=Thiobacillus denitrificans RepID=UPI00037E76EF
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_610_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5849..6343
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003635963
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_610_14
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6576..6869)
DNA (294bp) protein (98aa)
tRNA/rRNA methyltransferase SpoU n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6A9W0_9PROT
tRNA/rRNA methyltransferase SpoU
tRNA/rRNA methyltransferase SpoU {ECO:0000313|EMBL:BAN34795.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_02272018_0_2um_scaffold_610_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6869..7222)
DNA (354bp) protein (118aa)
membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036BCF46
transmembrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_610_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7222..7995)
DNA (774bp) protein (258aa)
hypothetical protein id=12495559 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_610_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8015..8839)
DNA (825bp) protein (275aa)
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00037759A9
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_610_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8900..10096)
DNA (1197bp) protein (399aa)
succinyldiaminopimelate transaminase (EC:2.6.1.11); K14267 N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17] id=12495561 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
succinyldiaminopimelate transaminase (EC:2.6.1.11)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_610_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10159..11061
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036BFF10
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_610_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11054..11431
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000376C7DF
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_610_21
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11437..13380)
DNA (1944bp) protein (648aa)
Uncharacterized protein n=1 Tax=Herbaspirillum sp. GW103 RepID=I3CU20_9BURK
Diguanylate cyclase {ECO:0000313|EMBL:KIF82410.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
diguanylate cyclase domain protein
RTP_02272018_0_2um_scaffold_610_22
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13577..14842)
DNA (1266bp) protein (422aa)
sugar kinase n=1 Tax=Thiobacillus thioparus RepID=UPI0003616A39
FGGY family sugar kinase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_610_23
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14847..15389)
DNA (543bp) protein (181aa)
7-cyano-7-deazaguanine reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D462A
7-cyano-7-deazaguanine reductase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_610_24
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15457..18954
DNA (3498bp) protein (1166aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036CA624
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
condensin subunit Smc
RTP_02272018_0_2um_scaffold_610_25
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19007..19234
DNA (228bp) protein (76aa)
CopG/Arc/MetJ family transcriptional regulator id=12495567 bin=THIO_HI species=Pseudomonas mendocina genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:ENO95510.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
addiction module antidote family protein
RTP_02272018_0_2um_scaffold_610_26
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19436..19732
DNA (297bp) protein (99aa)
hypothetical protein id=12495571 bin=THIO_HI species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
RTP_02272018_0_2um_scaffold_610_27
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19771..20178
DNA (408bp) protein (136aa)
XRE family transcriptional regulator id=12495572 bin=THIO_HI species=Methylobacter tundripaludum genus=Methylobacter taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Putative transcription regulator with HTH domain {ECO:0000313|EMBL:EGW23209.1}; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
XRE family transcriptional regulator
RTP_02272018_0_2um_scaffold_610_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20276..21559
DNA (1284bp) protein (428aa)
seryl-tRNA synthetase (EC:6.1.1.11); K01875 seryl-tRNA synthetase [EC:6.1.1.11] id=12495574 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
seryl-tRNA synthetase (EC:6.1.1.11)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_610_29
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21581..22948)
DNA (1368bp) protein (456aa)
murein transglycosylase n=1 Tax=Thiobacillus thioparus RepID=UPI00037E85D8
extracellular solute-binding protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_610_trna_1
unknown

Not on your lists

23063..23149
DNA (87bp)
transferRNA Ser
Displaying items 1-30 of 40 in total

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