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RTP_02272018_0_2um_scaffold_705

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_705_1
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40..468)
DNA (429bp) protein (143aa)
host cell attachment-required protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00037A75B2
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
RTP_02272018_0_2um_scaffold_705_2
Leptolyngbya sp. PCC 7375, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(495..1196)
DNA (702bp) protein (234aa)
Dienelactone hydrolase-like enzyme n=1 Tax=Leptolyngbya sp. PCC 7375 RepID=K9EGX1_9CYAN
Dienelactone hydrolase-like enzyme {ECO:0000313|EMBL:EKU96449.1}; TaxID=102129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.;" source="Leptolyngbya sp. PCC 7375.;"
dienelactone hydrolase-like enzyme
RTP_02272018_0_2um_scaffold_705_3
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(1141..2028)
DNA (888bp) protein (296aa)
Erythromycin esterase-like enzyme n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WFT4_9CYAN
erythromycin esterase-like enzyme
Erythromycin esterase-like enzyme {ECO:0000313|EMBL:AFZ19280.1}; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp. PCC 7113.;"
RTP_02272018_0_2um_scaffold_705_4
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2125..2352)
DNA (228bp) protein (76aa)
ChaB n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y689_NITMU
ChaB
ChaB {ECO:0000313|EMBL:ABB75732.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
RTP_02272018_0_2um_scaffold_705_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3024..5546
DNA (2523bp) protein (841aa)
DNA mismatch repair protein MutS id=1326625 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
DNA mismatch repair protein MutS
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_705_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5543..5827
DNA (285bp) protein (95aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000364E644
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_705_7
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6067..6912
DNA (846bp) protein (282aa)
Diguanylate cyclase n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DJ84_METS0
diguanylate cyclase
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
RTP_02272018_0_2um_scaffold_705_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6982..7284)
DNA (303bp) protein (101aa)
Putative uncharacterized protein id=1326628 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_705_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7372..8811)
DNA (1440bp) protein (480aa)
nuoN; NADH dehydrogenase subunit N (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit N id=1326629 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_705_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8837..10321)
DNA (1485bp) protein (495aa)
nuoM; NADH dehydrogenase subunit M (EC:1.6.5.3)
NADH:ubiquinone oxidoreductase subunit M n=1 Tax=Thiobacillus denitrificans RepID=UPI000368D282
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_705_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10348..12336)
DNA (1989bp) protein (663aa)
nuoL; NADH dehydrogenase I subunit L (EC:1.6.5.3)
NADH:ubiquinone oxidoreductase subunit L n=1 Tax=Thiobacillus thioparus RepID=UPI000376A927
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_705_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12342..12647)
DNA (306bp) protein (102aa)
nuoK; NADH dehydrogenase subunit K (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit K id=1326632 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_705_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12644..13303)
DNA (660bp) protein (220aa)
nuoJ; NADH dehydrogenase I subunit J (EC:1.6.5.3)
NADH:ubiquinone oxidoreductase subunit J n=1 Tax=Thiobacillus denitrificans RepID=UPI00036036B2
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_705_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13313..13801)
DNA (489bp) protein (163aa)
nuoI; NADH dehydrogenase subunit I (EC:1.6.5.3)
NADH dehydrogenase subunit I n=1 Tax=Thiobacillus thioparus RepID=UPI0003768864
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_705_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13809..14825)
DNA (1017bp) protein (339aa)
nuoH; NADH dehydrogenase I subunit H (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit H id=1326635 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_705_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14825..17179)
DNA (2355bp) protein (785aa)
nuoG; NADH dehydrogenase subunit G (EC:1.6.5.3)
NADH dehydrogenase subunit G n=1 Tax=Thiobacillus thioparus RepID=UPI00036A5707
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_705_17
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17182..18474)
DNA (1293bp) protein (431aa)
nuoF; NADH-quinone oxidoreductase subunit F (EC:1.6.5.3)
NADH-quinone oxidoreductase, chain F {ECO:0000313|EMBL:AAZ97100.1}; EC=1.6.5.3 {ECO:0000313|EMBL:AAZ97100.1};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
NADH dehydrogenase n=1 Tax=Thiobacillus denitrificans RepID=UPI000371CBDB
RTP_02272018_0_2um_scaffold_705_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18488..18991)
DNA (504bp) protein (168aa)
nuoE; NADH dehydrogenase subunit E (EC:1.6.5.3)
NADH dehydrogenase subunit E n=1 Tax=Thiobacillus thioparus RepID=UPI00036FF2DD
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_705_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18991..20244)
DNA (1254bp) protein (418aa)
nuoD; NADH dehydrogenase subunit D (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit D id=1326639 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_705_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20314..20928)
DNA (615bp) protein (205aa)
nuoC; NADH dehydrogenase subunit C (EC:1.6.5.3)
NADH dehydrogenase subunit C n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A6749
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_705_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20938..21414)
DNA (477bp) protein (159aa)
nuoB; NADH dehydrogenase subunit B (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit B 2 id=1326641 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_705_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21437..21793)
DNA (357bp) protein (119aa)
nuoA; NADH dehydrogenase I subunit A (EC:1.6.5.3)
NADH:ubiquinone oxidoreductase subunit A n=1 Tax=Thiobacillus denitrificans RepID=UPI00035CFBB6
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_705_trna_1
unknown

Not on your lists

comp(21958..22039)
DNA (82bp)
transferRNA Leu
RTP_02272018_0_2um_scaffold_705_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22108..22464)
DNA (357bp) protein (119aa)
Preprotein translocase SecG subunit id=1326643 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
secG; preprotein translocase subunit SecG
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_705_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22492..23238)
DNA (747bp) protein (249aa)
tpiA; triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase id=1326644 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_705_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23322..24119)
DNA (798bp) protein (266aa)
Phosphate import ATP-binding protein PstB id=1326645 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
phosphate transport system permease 1
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_705_26
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24138..24980)
DNA (843bp) protein (281aa)
Phosphate transport system permease protein 2 n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJQ9_THIDA
phosphate transport system permease 2
Phosphate transport system permease protein 2 {ECO:0000313|EMBL:AAZ97091.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_705_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24989..26074)
DNA (1086bp) protein (362aa)
phosphate transporter permease subunit PstC n=1 Tax=Thiobacillus denitrificans RepID=UPI000371F5E8
phosphate ABC transporter permease PstC
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_705_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26094..27134)
DNA (1041bp) protein (347aa)
Periplasmic phosphate binding protein id=1326650 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
periplasmic phosphate binding protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_705_29
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27131..28495)
DNA (1365bp) protein (455aa)
phosphoglucosamine mutase (EC:5.4.2.10)
phosphoglucosamine mutase n=1 Tax=Thiobacillus thioparus RepID=UPI000365C22E
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying items 1-30 of 32 in total

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