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RTP_02272018_0_2um_scaffold_777

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_777_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..508)
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037C1B21
TetR family transcriptional regulator
Possible Transcriptional Regulator, TetR family {ECO:0000313|EMBL:AAZ96435.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_777_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(657..1301)
DNA (645bp) protein (215aa)
folE; GTP cyclohydrolase I (EC:3.5.4.16)
GTP cyclohydrolase id=1342782 bin=GWE1_T_denit_62_9 species=uncultured beta proteobacterium genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_777_3
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1303..1755)
DNA (453bp) protein (151aa)
dienelactone hydrolase n=1 Tax=Thiobacillus denitrificans RepID=UPI000364FE7D
Dienelacton hydrolase {ECO:0000313|EMBL:CAI78505.1}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
dienelactone hydrolase
RTP_02272018_0_2um_scaffold_777_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1834..2085)
DNA (252bp) protein (84aa)
dienelactone hydrolase n=1 Tax=Thiobacillus thioparus RepID=UPI000381359F
dienelactone hydrolase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_777_5
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2204..2926
DNA (723bp) protein (241aa)
S4 domain protein n=1 Tax=uncultured beta proteobacterium RepID=Q2Z096_9PROT
S4 domain protein {ECO:0000313|EMBL:CAI78504.1}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
RNA-binding S4 domain-containing protein
RTP_02272018_0_2um_scaffold_777_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2946..4208)
DNA (1263bp) protein (421aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000363A7A3
peptidase U32
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_777_7
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4643..5683
DNA (1041bp) protein (347aa)
Putative nucleoid-associated protein n=1 Tax=Pseudomonas fluorescens (strain Pf0-1) RepID=Q3KBR4_PSEPF
Nucleoid-associated protein YejK {ECO:0000313|EMBL:GAO34586.1}; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_777_8
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5664..6800
DNA (1137bp) protein (379aa)
Uncharacterized protein n=1 Tax=Alishewanella jeotgali KCTC 22429 RepID=H3Z9M0_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:GAO34585.1}; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_777_9
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7078..9660)
DNA (2583bp) protein (861aa)
type III restriction enzyme, res subunit n=1 Tax=Xanthomonas axonopodis RepID=UPI0002FB85E9
type III restriction enzyme, res subunit
Tax=CG_Beta_01
RTP_02272018_0_2um_scaffold_777_10
Yersinia kristensenii, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9664..11874)
DNA (2211bp) protein (737aa)
DNA methylase N-4/N-6 domain protein n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4TVA0_YERKR
DNA methylase N-4/N-6 domain protein {ECO:0000313|EMBL:EEP91778.1}; TaxID=527012 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia kristensenii ATCC 33638.;"
DNA methylase N-4/N-6 domain-containing protein
RTP_02272018_0_2um_scaffold_777_11
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12232..12678)
DNA (447bp) protein (149aa)
Universal stress protein n=1 Tax=uncultured beta proteobacterium RepID=Q2Z098_9PROT
universal stress protein
Tax=CG_Beta_01
RTP_02272018_0_2um_scaffold_777_12
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12736..13677)
DNA (942bp) protein (314aa)
Putative uncharacterized protein n=1 Tax=uncultured beta proteobacterium RepID=Q2Z099_9PROT
Putative uncharacterized protein {ECO:0000313|EMBL:CAI78501.1}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_777_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13678..14748)
DNA (1071bp) protein (357aa)
selenophosphate synthetase (EC:2.7.9.3)
segregation protein A n=1 Tax=Thiobacillus thioparus RepID=UPI000372E793
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_777_14
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14817..15974
DNA (1158bp) protein (386aa)
Putative uncharacterized protein n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0A0_9PROT
Putative uncharacterized protein {ECO:0000313|EMBL:CAI78500.1}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_777_15
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15995..17155)
DNA (1161bp) protein (387aa)
coproporphyrinogen III oxidase (EC:1.3.99.22)
Coproporphyrinoben III oxidase and related Fe-S oxidoreductase n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0A1_9PROT
Coproporphyrinoben III oxidase and related Fe-S oxidoreductase {ECO:0000313|EMBL:CAI78499.1}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
RTP_02272018_0_2um_scaffold_777_16
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(17163..17762)
DNA (600bp) protein (200aa)
putative deoxyribonucleotide triphosphate pyrophosphatase; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19] id=12497810 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
deoxyribonucleotide triphosphate pyrophosphatase
RTP_02272018_0_2um_scaffold_777_17
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17802..18533)
DNA (732bp) protein (244aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
RNAse PH (EC:2.7.7.56)
Ribonuclease PH n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0A3_9PROT
RTP_02272018_0_2um_scaffold_777_18
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18625..19533)
DNA (909bp) protein (303aa)
Serine/threonine protein phosphatase n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0A4_9PROT
Serine/threonine protein phosphatase {ECO:0000313|EMBL:CAI78496.1}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
Ser/Thr phosphatase
RTP_02272018_0_2um_scaffold_777_19
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19543..20559)
DNA (1017bp) protein (339aa)
Putative uncharacterized protein n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0A5_9PROT
Putative uncharacterized protein {ECO:0000313|EMBL:CAI78495.1}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
Serine/threonine protein kinase
RTP_02272018_0_2um_scaffold_777_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20594..21460
DNA (867bp) protein (289aa)
stress-induced protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003630672
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_777_21
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21494..22123
DNA (630bp) protein (210aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
guanylate kinase (EC:2.7.4.8)
Guanylate kinase n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0A7_9PROT
RTP_02272018_0_2um_scaffold_777_22
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22153..22356
DNA (204bp) protein (68aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
DNA-directed RNA polymerase subunit omega n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0A8_9PROT
RNA polymerase, omega subunit
RTP_02272018_0_2um_scaffold_777_23
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22328..24013
DNA (1686bp) protein (562aa)
metal dependent phosphohydrolase (EC:2.7.6.5)
Guanosine polyphosphate pyrophosphohydrolase n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0A9_9PROT
Guanosine polyphosphate pyrophosphohydrolase {ECO:0000313|EMBL:CAI78491.1}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
Displaying 23 items

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