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RTP_02272018_0_2um_scaffold_1687

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_1687_1
Thiorhodovibrio sp. 970, Thiorhodovibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

332..532
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Thiorhodovibrio sp. 970 RepID=H8Z7D3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIC19849.1}; TaxID=631362 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodovibrio.;" source="Thiorhodovibrio sp. 970.;"
antitoxin
RTP_02272018_0_2um_scaffold_1687_2
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

586..903
DNA (318bp) protein (106aa)
twitching motility protein PilT n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI000380AC88
twitching motility protein PilT
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
RTP_02272018_0_2um_scaffold_1687_3
Gallionella capsiferriformans, Gallionella, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(954..1256)
DNA (303bp) protein (101aa)
plasmid maintenance system antidote protein id=12496308 bin=THIO_MID species=Gallionella capsiferriformans genus=Gallionella taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
plasmid maintenance system antidote protein
Plasmid maintenance system antidote protein, XRE family {ECO:0000313|EMBL:ADL55474.1}; TaxID=395494 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Gallionella.;" source="Gallionella capsiferriformans (strain ES-2) (Gallionella ferruginea; capsiferriformans (strain ES-2)).;"
RTP_02272018_0_2um_scaffold_1687_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1280..1558)
DNA (279bp) protein (93aa)
hypothetical protein; K07334 proteic killer suppression protein id=12496309 bin=THIO_MID species=Herbaspirillum seropedicae genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
plasmid maintenance system killer protein HigB
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
RTP_02272018_0_2um_scaffold_1687_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1672..3084
DNA (1413bp) protein (471aa)
MFS superfamily drug efflux transporter id=1335136 bin=GWE1_T_denit_62_9 species=Nitrosospira sp. APG3 genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
major facilitator superfamily drug efflux transporter
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_1687_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3440..4033
DNA (594bp) protein (198aa)
Putative uncharacterized protein id=1335134 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_1687_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4112..5290)
DNA (1179bp) protein (393aa)
S-adenosylmethionine synthase id=12498683 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
S-adenosylmethionine synthase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_1687_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5360..6535)
DNA (1176bp) protein (392aa)
methylase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036FAFB7
putative methyltransferase, Methylase of polypeptide chain release factors
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_1687_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6608..7348)
DNA (741bp) protein (247aa)
pteridine reductase; K03793 pteridine reductase [EC:1.5.1.33] id=12494233 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
pteridine reductase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_1687_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7405..8550
DNA (1146bp) protein (382aa)
Putative uncharacterized protein id=1335132 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_1687_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8471..9346)
DNA (876bp) protein (292aa)
cation transporter n=1 Tax=Thiobacillus denitrificans RepID=UPI000364BB9D
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_1687_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9358..9792)
DNA (435bp) protein (145aa)
heat-shock protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003827700
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_1687_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9812..10774)
DNA (963bp) protein (321aa)
PhoH-like protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SFF2_THIDA
PhoH-like protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_02272018_0_2um_scaffold_1687_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10771..12111)
DNA (1341bp) protein (447aa)
tRNA-i(6)A37 thiotransferase enzyme MiaB; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA id=12498675 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
tRNA-i(6)A37 thiotransferase enzyme MiaB
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_1687_trna_1
unknown

Not on your lists

comp(12192..12265)
DNA (74bp)
transferRNA Met
RTP_02272018_0_2um_scaffold_1687_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12364..12918)
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036B443A
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_1687_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12963..13799)
DNA (837bp) protein (279aa)
glutamyl-tRNA synthetase (EC:6.1.1.17)
glutamyl-Q tRNA(Asp) ligase n=1 Tax=Thiobacillus thioparus RepID=UPI00035C8877
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_1687_17

Not on your lists

comp(13905..14267)
DNA (363bp) protein (121aa)
Globin n=1 Tax=mine drainage metagenome RepID=T0YL52_9ZZZZ
Globin {ECO:0000313|EMBL:EQD33848.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
globin
RTP_02272018_0_2um_scaffold_1687_18
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14466..15197)
DNA (732bp) protein (244aa)
cobalamin-5'-phosphate synthase (EC:2.7.8.26)
Adenosylcobinamide-GDP ribazoletransferase {ECO:0000255|HAMAP-Rule:MF_00719}; EC=2.7.8.26 {ECO:0000255|HAMAP-Rule:MF_00719};; Cobalamin synthase {ECO:0000255|HAMAP-Rule:MF_00719}; Cobalamin-5'-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00719}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Cobalamin synthase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=COBS_THIDA
RTP_02272018_0_2um_scaffold_1687_19
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15185..15796)
DNA (612bp) protein (204aa)
Alpha-ribazole-5`-phosphate phosphatase CobC, putative n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SFE6_THIDA
alpha-ribazole-5'-phosphate phosphatase
Alpha-ribazole-5`-phosphate phosphatase CobC, putative {ECO:0000313|EMBL:AAZ98664.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_1687_20
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15789..16835)
DNA (1047bp) protein (349aa)
cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00230, ECO:0000256|SAAS:SAAS00013344}; Short=NN:DBI PRT {ECO:0000256|HAMAP-Rule:MF_00230};; EC=2.4.2.21 {ECO:0000256|HAMAP-Rule:MF_00230, ECO:0000256|SAAS:SAAS00013328};; N(1)-alpha-phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00230}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SFE5_THIDA
RTP_02272018_0_2um_scaffold_1687_21
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16832..17350)
DNA (519bp) protein (173aa)
adenosylcobinamide kinase (EC:2.7.1.156)
Adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SFE4_THIDA
Adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase {ECO:0000313|EMBL:AAZ98666.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_1687_22
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17344..18912)
DNA (1569bp) protein (523aa)
cobyric acid synthase (EC:6.3.5.10)
Cobyric acid synthase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SFE3_THIDA
Cobyric acid synthase {ECO:0000256|HAMAP-Rule:MF_00028, ECO:0000256|SAAS:SAAS00231811}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_1687_23
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19081..19248)
DNA (168bp) protein (56aa)
threonine-phosphate decarboxylase (EC:2.6.1.-)
Cobalamin biosynthetic protein CobC n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SFE2_THIDA
Cobalamin biosynthetic protein CobC {ECO:0000313|EMBL:AAZ98668.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Displaying 24 items

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