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RTP_02272018_0_2um_scaffold_544

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Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_544_1

Not on your lists

comp(2..607)
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QR63_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI09734.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_544_2

Not on your lists

comp(607..1845)
DNA (1239bp) protein (413aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QR62_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI09733.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_544_3
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1835..3235)
DNA (1401bp) protein (467aa)
aromatic-L-amino-acid decarboxylase (EC:4.1.1.28)
Aromatic-L-amino-acid decarboxylase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AA93_9PROT
Cytochrome D ubiquinol oxidase subunit I {ECO:0000313|EMBL:GAO35722.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
RTP_02272018_0_2um_scaffold_544_4

Not on your lists

comp(3405..3707)
DNA (303bp) protein (101aa)
Putative ribonuclease inhibitor n=1 Tax=mine drainage metagenome RepID=E6QTR7_9ZZZZ
Putative ribonuclease inhibitor {ECO:0000313|EMBL:CBI10639.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
barnase inhibitor barstar
RTP_02272018_0_2um_scaffold_544_5
Chromobacterium violaceum, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3704..4141)
DNA (438bp) protein (146aa)
Probable ribonuclease n=1 Tax=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) RepID=Q7NYS1_CHRVO
Ribonuclease {ECO:0000313|EMBL:KJH67544.1}; TaxID=536 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium violaceum.;"
ribonuclease
RTP_02272018_0_2um_scaffold_544_6

Not on your lists

comp(4138..5538)
DNA (1401bp) protein (467aa)
Putative Phosphate starvation-inducible protein PhoH-like n=1 Tax=mine drainage metagenome RepID=E6QTR6_9ZZZZ
Putative Phosphate starvation-inducible protein PhoH-like {ECO:0000313|EMBL:CBI10638.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
nucleotide binding protein
RTP_02272018_0_2um_scaffold_544_7
Herbaspirillum sp. GW103, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5550..5996)
DNA (447bp) protein (149aa)
bcp; bacterioferritin comigratory oxidoreductase (EC:1.11.1.-)
Bacterioferritin comigratory oxidoreductase n=1 Tax=Herbaspirillum sp. GW103 RepID=I3CUH4_9BURK
Bacterioferritin comigratory oxidoreductase {ECO:0000313|EMBL:EIJ47267.1}; TaxID=1175306 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. GW103.;"
RTP_02272018_0_2um_scaffold_544_8
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6008..6565)
DNA (558bp) protein (186aa)
DNA mismatch repair protein MutS n=1 Tax=Methylophilus RepID=UPI00036E1938
Smr protein/MutS2 (modular protein)
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
RTP_02272018_0_2um_scaffold_544_9

Not on your lists

comp(6571..7527)
DNA (957bp) protein (319aa)
Thioredoxin reductase (TRXR) {ECO:0000313|EMBL:CBI10635.1}; EC=1.8.1.9 {ECO:0000313|EMBL:CBI10635.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
thioredoxin reductase (EC:1.8.1.9)
Thioredoxin reductase id=1348793 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
RTP_02272018_0_2um_scaffold_544_10

Not on your lists

7630..9912
DNA (2283bp) protein (761aa)
Putative DNA translocase ftsK n=1 Tax=mine drainage metagenome RepID=E6QTR2_9ZZZZ
Putative DNA translocase ftsK {ECO:0000313|EMBL:CBI10634.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
cell division FtsK/SpoIIIE
RTP_02272018_0_2um_scaffold_544_11

Not on your lists

9905..10528
DNA (624bp) protein (208aa)
Outer-membrane lipoprotein carrier protein n=1 Tax=mine drainage metagenome RepID=E6QTR1_9ZZZZ
Outer-membrane lipoprotein carrier protein {ECO:0000313|EMBL:CBI10633.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
outer membrane lipoprotein carrier protein LolA
RTP_02272018_0_2um_scaffold_544_12
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10525..11832
DNA (1308bp) protein (436aa)
ATPase AAA n=1 Tax=Uliginosibacterium gangwonense RepID=UPI00036933BB
recombination factor protein RarA
Replication recombination protein A {ECO:0000313|EMBL:ELX13664.1}; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. HH01.;"
RTP_02272018_0_2um_scaffold_544_13
RIFOXYD2_FULL_Sideroxydans_59_7_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12023..13597
DNA (1575bp) protein (525aa)
Response regulator receiver modulated metal dependent phosphohydrolase n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CRF2_SIDLE
response regulator receiver modulated metal dependent phosphohydrolase
Tax=RIFOXYD2_FULL_Sideroxydans_59_7_curated
RTP_02272018_0_2um_scaffold_544_14
GWA2_Gallionellales_59_43_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13669..14499)
DNA (831bp) protein (277aa)
UDP pyrophosphate phosphatase (EC:3.6.1.27)
UDP pyrophosphate phosphatase n=1 Tax=Methyloversatilis sp. NVD RepID=UPI0003771C64
Tax=GWA2_Gallionellales_59_43_curated
RTP_02272018_0_2um_scaffold_544_15
Pandoraea oxalativorans, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14657..16573)
DNA (1917bp) protein (639aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=573737 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea oxalativorans.;"
Phosphomethylpyrimidine synthase ThiC n=1 Tax=Pandoraea pnomenusa 3kgm RepID=V5PQ78_9BURK
thiamine biosynthesis protein ThiC
RTP_02272018_0_2um_scaffold_544_16
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16757..17410
DNA (654bp) protein (218aa)
Protein-L-isoaspartate(D-aspartate) O-methyltransferase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ADT8_9PROT
protein-L-isoaspartate(D-aspartate) O-methyltransferase
Protein-L-isoaspartate(D-aspartate) O-methyltransferase {ECO:0000313|EMBL:BAN36718.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_02272018_0_2um_scaffold_544_17
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17410..17733
DNA (324bp) protein (108aa)
Rhodanese-related sulfurtransferase n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GL63_THISH
thiF; Sulfur carrier protein adenylyltransferase ThiF
Sulfurtransferase {ECO:0000313|EMBL:KIF81782.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
RTP_02272018_0_2um_scaffold_544_18
GWA2_Gallionellales_54_124_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17943..19190)
DNA (1248bp) protein (416aa)
Kdo transferase n=1 Tax=mine drainage metagenome RepID=E6QSG9_9ZZZZ
three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein
Tax=GWA2_Gallionellales_54_124_curated
RTP_02272018_0_2um_scaffold_544_19

Not on your lists

comp(19190..20335)
DNA (1146bp) protein (382aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QSH0_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10192.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_544_20

Not on your lists

20382..21122
DNA (741bp) protein (247aa)
pteridine reductase n=1 Tax=Thiobacillus thioparus RepID=UPI000378B8F2
Short-chain dehydrogenase/reductase (SDR) superfamily {ECO:0000313|EMBL:CBI10193.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
pteridine reductase
RTP_02272018_0_2um_scaffold_544_21
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21265..24108)
DNA (2844bp) protein (948aa)
diguanylate cyclase/phosphodiesterase id=12495900 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
diguanylate cyclase/phosphodiesterase
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_02272018_0_2um_scaffold_544_22
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24108..24980)
DNA (873bp) protein (291aa)
ABC-type phosphate/phosphonate transport system periplasmic component-like protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RL14_ACCPU
phosphate/phosphonate ABC transporter membrane protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_02272018_0_2um_scaffold_544_23
Thauera sp. MZ1T, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25306..26457)
DNA (1152bp) protein (384aa)
Uncharacterized protein n=1 Tax=Thauera sp. (strain MZ1T) RepID=C4KA33_THASP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR01259.1}; TaxID=85643 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. (strain MZ1T).;"
RTP_02272018_0_2um_scaffold_544_24
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26513..29218)
DNA (2706bp) protein (902aa)
Protein translocase subunit SecA n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AJ36_9PROT
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
secA; preprotein translocase subunit SecA
RTP_02272018_0_2um_scaffold_544_25
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29309..29758
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Azoarcus sp. KH32C RepID=H0Q4G3_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:GAO37096.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_544_26
BJP_S1_SUB10_Methylophilales_55_32, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29755..29943)
DNA (189bp) protein (63aa)
Putative uncharacterized protein id=2029278 bin=GWE2_Gallionellales_58_10 species=Gallionella capsiferriformans genus=Gallionella taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
hypothetical protein
Tax=BJP_S1_SUB10_Methylophilales_55_32
RTP_02272018_0_2um_scaffold_544_27
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29943..30887)
DNA (945bp) protein (315aa)
lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC:3.5.1.-)
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase id=1324225 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
RTP_02272018_0_2um_scaffold_544_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30922..32091)
DNA (1170bp) protein (390aa)
cell division protein FtsZ; K03531 cell division protein FtsZ id=12495930 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
cell division protein FtsZ
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_544_29
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32173..33408)
DNA (1236bp) protein (412aa)
cell division protein FtsA; K03590 cell division protein FtsA id=12494142 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
cell division protein FtsA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_544_30
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33405..34142)
DNA (738bp) protein (246aa)
Cell division protein FtsQ n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AD93_9PROT
cell division protein FtsQ
Tax=RBG_16_Betaproteobacteria_58_11_curated
Displaying items 1-30 of 33 in total

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