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RTP_02272018_0_2um_scaffold_633

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_633_1
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3..1106
DNA (1104bp) protein (368aa)
5'-nucleotidase n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QW52_RALPI
5'-nucleotidase
5'-nucleotidase {ECO:0000313|EMBL:AGW92297.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
RTP_02272018_0_2um_scaffold_633_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1318..1737
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QSS1_9ZZZZ
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_633_3
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2080..3774
DNA (1695bp) protein (565aa)
AsmA n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q223J6_RHOFD
AsmA
Tax=GWA2_Rhodocyclales_65_20_curated
RTP_02272018_0_2um_scaffold_633_4
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3857..5914
DNA (2058bp) protein (686aa)
Thymidylate kinase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJ73_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
RTP_02272018_0_2um_scaffold_633_5
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5965..7227)
DNA (1263bp) protein (421aa)
Outer membrane efflux protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ALZ9_9PROT
Uncharacterized protein {ECO:0000313|EMBL:GAO36747.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
outer membrane efflux protein
RTP_02272018_0_2um_scaffold_633_6
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7228..10299)
DNA (3072bp) protein (1024aa)
CzcA family heavy metal efflux pump n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AHV6_9PROT
Cytochrome C peroxidase {ECO:0000313|EMBL:GAO36745.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
czcA1; CzcA family heavy metal efflux pump
RTP_02272018_0_2um_scaffold_633_7
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10302..11378)
DNA (1077bp) protein (359aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CTB3_SIDLE
efflux transporter, RND family, MFP subunit
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ADE12199.1}; Flags: Precursor;; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
RTP_02272018_0_2um_scaffold_633_8
unknown

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comp(11436..11834)
DNA (399bp) protein (133aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_633_9
Desulfobulbaceae bacterium BRH_c16a, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(11872..12861)
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RRD7_ACCPU
Uncharacterized protein {ECO:0000313|EMBL:KJR98825.1}; TaxID=1629713 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae.;" source="Desulfobulbaceae bacterium BRH_c16a.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_633_10
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12895..13344)
DNA (450bp) protein (150aa)
membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000365659F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96753.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_633_11

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comp(13356..13934)
DNA (579bp) protein (193aa)
Ribonuclease HII (RNase HII) {ECO:0000313|EMBL:CBI09530.1}; EC=3.1.26.4 {ECO:0000313|EMBL:CBI09530.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Ribonuclease HII (RNase HII) n=1 Tax=mine drainage metagenome RepID=E6QQK9_9ZZZZ
rnhB; ribonuclease h
RTP_02272018_0_2um_scaffold_633_12

Not on your lists

comp(13925..15085)
DNA (1161bp) protein (387aa)
Lipid-A-disaccharide synthase {ECO:0000313|EMBL:CBI09529.1}; EC=2.4.1.182 {ECO:0000313|EMBL:CBI09529.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
lipid-A-disaccharide synthase (EC:2.4.1.182)
Lipid-A-disaccharide synthase n=1 Tax=mine drainage metagenome RepID=E6QQK8_9ZZZZ
RTP_02272018_0_2um_scaffold_633_13

Not on your lists

comp(15088..15858)
DNA (771bp) protein (257aa)
Acyl-(Acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase (UDP-N-acetylglucosamine acyltransferase) {ECO:0000313|EMBL:CBI09528.1}; EC=2.3.1.129 {ECO:0000313|EMBL:CBI09528.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
UDP-N-acetylglucosamine acyltransferase (EC:2.3.1.129)
Acyl-(Acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase (UDP-N-acetylglucosamine acyltransferase) n=1 Tax=mine drainage metagenome RepID=E6QQK7_9ZZZZ
RTP_02272018_0_2um_scaffold_633_14

Not on your lists

comp(15880..16317)
DNA (438bp) protein (146aa)
(3R)-hydroxymyristoyl-(Acyl-carrier-protein) dehydratase ((3R)-hydroxymyristoyl ACP dehydrase) {ECO:0000313|EMBL:CBI09527.1}; EC=4.2.1.- {ECO:0000313|EMBL:CBI09527.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
(3R)-hydroxymyristoyl-(Acyl-carrier-protein) dehydratase ((3R)-hydroxymyristoyl ACP dehydrase) n=1 Tax=mine drainage metagenome RepID=E6QQK6_9ZZZZ
beta-hydroxyacyl-(acyl carrier protein) dehydratase FabZ
RTP_02272018_0_2um_scaffold_633_15

Not on your lists

comp(16310..17356)
DNA (1047bp) protein (349aa)
UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase {ECO:0000313|EMBL:CBI09526.1}; EC=2.3.1.- {ECO:0000313|EMBL:CBI09526.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC:2.3.1.-)
UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase n=1 Tax=mine drainage metagenome RepID=E6QQK5_9ZZZZ
RTP_02272018_0_2um_scaffold_633_16

Not on your lists

comp(17361..17861)
DNA (501bp) protein (167aa)
Putative Outer membrane chaperone Skp (OmpH) n=1 Tax=mine drainage metagenome RepID=E6QQK4_9ZZZZ
Putative Outer membrane chaperone Skp (OmpH) {ECO:0000313|EMBL:CBI09525.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ompH; outer membrane protein
RTP_02272018_0_2um_scaffold_633_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17872..20187)
DNA (2316bp) protein (772aa)
surface antigen (D15); K07277 outer membrane protein id=12493340 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
surface antigen (D15)
Tax=GWE1_Thiobacillus_62_9_curated
RTP_02272018_0_2um_scaffold_633_18
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20192..21544)
DNA (1353bp) protein (451aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
Peptidase M50 membrane-associated zinc metallopeptidase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AL98_9PROT
peptidase M50 membrane-associated zinc metallopeptidase
RTP_02272018_0_2um_scaffold_633_19
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21544..22722)
DNA (1179bp) protein (393aa)
dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) n=1 Tax=mine drainage metagenome RepID=E6QQK1_9ZZZZ
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_02272018_0_2um_scaffold_633_20

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comp(22728..23540)
DNA (813bp) protein (271aa)
Uncharacterized protein {ECO:0000313|EMBL:CBI09521.1}; EC=2.7.7.41 {ECO:0000313|EMBL:CBI09521.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QQK0_9ZZZZ
phosphatidate cytidylyltransferase
RTP_02272018_0_2um_scaffold_633_21
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23530..24288)
DNA (759bp) protein (253aa)
undecaprenyl diphosphate synthase (EC:2.5.1.31)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
Isoprenyl transferase n=2 Tax=Methylovorus RepID=C6XDM7_METSD
RTP_02272018_0_2um_scaffold_633_22
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24293..24850)
DNA (558bp) protein (186aa)
Ribosome recycling factor (Ribosome-releasing factor) (RRF) n=1 Tax=mine drainage metagenome RepID=E6QQJ8_9ZZZZ
ribosome recycling factor
Tax=RBG_16_Betaproteobacteria_56_24_curated
RTP_02272018_0_2um_scaffold_633_23

Not on your lists

comp(24863..25579)
DNA (717bp) protein (239aa)
Uridylate kinase (UK) (Uridine monophosphate kinase) (UMP kinase) {ECO:0000313|EMBL:CBI09518.1}; EC=2.7.4.- {ECO:0000313|EMBL:CBI09518.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Uridylate kinase (UK) (Uridine monophosphate kinase) (UMP kinase) n=1 Tax=mine drainage metagenome RepID=E6QQJ7_9ZZZZ
pyrH; uridylate kinase
RTP_02272018_0_2um_scaffold_633_24

Not on your lists

comp(25582..26454)
DNA (873bp) protein (291aa)
Elongation factor Ts (EF-Ts) n=1 Tax=mine drainage metagenome RepID=E6QQJ6_9ZZZZ
Elongation factor Ts (EF-Ts) {ECO:0000313|EMBL:CBI09517.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
translation elongation factor Ts
RTP_02272018_0_2um_scaffold_633_25

Not on your lists


comp(26531..27280)
DNA (750bp) protein (250aa)
30S ribosomal protein S2 n=1 Tax=mine drainage metagenome RepID=E6QQJ5_9ZZZZ
30S ribosomal protein S2 {ECO:0000313|EMBL:CBI09516.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
30S ribosomal protein S2
RTP_02272018_0_2um_scaffold_633_26

Not on your lists

comp(27430..28584)
DNA (1155bp) protein (385aa)
Putative Phospholipase D/nuclease n=1 Tax=mine drainage metagenome RepID=E6QR96_9ZZZZ
Putative Phospholipase D/nuclease {ECO:0000313|EMBL:CBI09768.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
phospholipase D/transphosphatidylase
RTP_02272018_0_2um_scaffold_633_27

Not on your lists

comp(28581..29333)
DNA (753bp) protein (251aa)
Putative metal-dependent hydrolase n=1 Tax=mine drainage metagenome RepID=E6QR97_9ZZZZ
Putative metal-dependent hydrolase {ECO:0000313|EMBL:CBI09769.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
endonuclease/exonuclease/phosphatase
RTP_02272018_0_2um_scaffold_633_28

Not on your lists

comp(29444..31117)
DNA (1674bp) protein (558aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QTD2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10504.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_633_29
unknown

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comp(31132..31239)
DNA (108bp) protein (36aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_633_30

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31372..32826
DNA (1455bp) protein (485aa)
Putative Bacterial type II secretion system protein E n=1 Tax=mine drainage metagenome RepID=E6QQH2_9ZZZZ
Putative Bacterial type II secretion system protein E {ECO:0000313|EMBL:CBI09493.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
general secretion pathway protein E
Displaying items 1-30 of 31 in total

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