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RTP_02272018_0_2um_scaffold_746

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_746_1
Methylobacillus flagellatus, Methylobacillus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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1..1779
DNA (1779bp) protein (593aa)
oligopeptidase A (EC:3.4.24.70)
Oligopeptidase A, Metallo peptidase, MEROPS family M03A {ECO:0000313|EMBL:ABE48421.1}; EC=3.4.24.70 {ECO:0000313|EMBL:ABE48421.1};; TaxID=265072 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylobacillus.;" source="Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875).;"
Oligopeptidase A, Metallo peptidase, MEROPS family M03A n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1H516_METFK
RTP_02272018_0_2um_scaffold_746_2

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1814..2323
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QU15_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10737.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_746_3
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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2320..3090
DNA (771bp) protein (257aa)
Exodeoxyribonuclease III {ECO:0000313|EMBL:GAO34075.1}; EC=3.1.11.2 {ECO:0000313|EMBL:GAO34075.1};; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
Exodeoxyribonuclease III Xth n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CQD2_SIDLE
exodeoxyribonuclease III Xth
RTP_02272018_0_2um_scaffold_746_4
unknown

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comp(3098..3565)
DNA (468bp) protein (156aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_746_5
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3579..3878)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QU12_9ZZZZ
hypothetical protein
Tax=BJP_IG2102_Gammaproteobacteria_62_140
RTP_02272018_0_2um_scaffold_746_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3957..5012)
DNA (1056bp) protein (352aa)
Conserved membrane protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SM61_THIDA
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
RTP_02272018_0_2um_scaffold_746_7

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comp(5022..6515)
DNA (1494bp) protein (498aa)
Competence protein ComM n=1 Tax=mine drainage metagenome RepID=E6QTZ3_9ZZZZ
Competence protein ComM {ECO:0000313|EMBL:CBI10715.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Mg chelatase subunit ChlI
RTP_02272018_0_2um_scaffold_746_8

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comp(6526..6780)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QTZ2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10714.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_746_9
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7053..7787
DNA (735bp) protein (245aa)
Uncharacterized conserved protein n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SUB1_JANMA
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:ABR91209.1}; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
RTP_02272018_0_2um_scaffold_746_10

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7871..8209
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II 2 n=1 Tax=mine drainage metagenome RepID=E6QTZ0_9ZZZZ
Nitrogen regulatory protein P-II 2 {ECO:0000313|EMBL:CBI10712.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
P2-like signal transmitter protein GlnK
RTP_02272018_0_2um_scaffold_746_11

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8225..9697
DNA (1473bp) protein (491aa)
Ammonia channel (Ammonia transporter) n=1 Tax=mine drainage metagenome RepID=E6QTY8_9ZZZZ
Ammonia channel (Ammonia transporter) {ECO:0000313|EMBL:CBI10710.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
amtB; ammonium transporter
RTP_02272018_0_2um_scaffold_746_12
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9789..10454)
DNA (666bp) protein (222aa)
DnaA regulatory inactivator Hda n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AAQ6_9PROT
DnaA regulatory inactivator Hda {ECO:0000313|EMBL:GAO37001.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
DnaA regulatory inactivator Hda
RTP_02272018_0_2um_scaffold_746_13
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10458..10835)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGB5_9PROT
hypothetical protein
Tax=CG_Beta_01
RTP_02272018_0_2um_scaffold_746_trna_1
unknown

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comp(10882..10955)
DNA (74bp)
transferRNA Arg
RTP_02272018_0_2um_scaffold_746_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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11123..11719
DNA (597bp) protein (199aa)
Cytochrome c class I n=1 Tax=Methylovorus sp. (strain SIP3-4) RepID=C6X9X4_METSD
class I cytochrome c
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_02272018_0_2um_scaffold_746_15
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11810..12877)
DNA (1068bp) protein (356aa)
alanine racemase (EC:5.1.1.1)
Alanine racemase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ACI1_9PROT
Tax=CG_Beta_01
RTP_02272018_0_2um_scaffold_746_16
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12878..14266)
DNA (1389bp) protein (463aa)
Replicative DNA helicase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ALM8_9PROT
dnaB; replicative DNA helicase
DNA helicase {ECO:0000313|EMBL:GAO35535.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
RTP_02272018_0_2um_scaffold_746_17
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14299..15186)
DNA (888bp) protein (296aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO35922.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
hypothetical protein id=12496590 bin=THIO_MID species=Dechloromonas aromatica genus=Dechloromonas taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
RTP_02272018_0_2um_scaffold_746_18
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15176..18865)
DNA (3690bp) protein (1230aa)
Methionine synthase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AZZ7_9PROT
methionine synthase
Tax=CG_Beta_01
RTP_02272018_0_2um_scaffold_746_19
GWA2_Gallionellales_60_142_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19161..19532
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Thiothrix flexilis RepID=UPI00037CCEEB
rhodanese-like protein
Tax=GWA2_Gallionellales_60_142_curated
RTP_02272018_0_2um_scaffold_746_20
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

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19627..20187
DNA (561bp) protein (187aa)
UPF0301 protein Msip34_0630 n=2 Tax=Methylovorus RepID=C6X9Q8_METSD
hypothetical protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
RTP_02272018_0_2um_scaffold_746_21

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20153..20626
DNA (474bp) protein (158aa)
Putative holliday junction resolvase n=1 Tax=mine drainage metagenome RepID=E6QWY3_9ZZZZ
Putative holliday junction resolvase {ECO:0000313|EMBL:CBI11757.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Holliday junction resolvase YqgF
RTP_02272018_0_2um_scaffold_746_22

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20613..21113
DNA (501bp) protein (167aa)
Bifunctional protein PyrR {ECO:0000313|EMBL:CBI11758.1}; EC=2.4.2.9 {ECO:0000313|EMBL:CBI11758.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase (EC:2.4.2.9)
Bifunctional protein PyrR n=1 Tax=mine drainage metagenome RepID=E6QWY4_9ZZZZ
RTP_02272018_0_2um_scaffold_746_23

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21110..22060
DNA (951bp) protein (317aa)
Aspartate carbamoyltransferase (Aspartate transcarbamylase) (ATCase) {ECO:0000313|EMBL:CBI11759.1}; EC=2.1.3.2 {ECO:0000313|EMBL:CBI11759.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
pyrB; aspartate carbamoyltransferase catalytic subunit (EC:2.1.3.2)
Aspartate carbamoyltransferase (Aspartate transcarbamylase) (ATCase) n=1 Tax=mine drainage metagenome RepID=E6QWY5_9ZZZZ
RTP_02272018_0_2um_scaffold_746_24
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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22060..23340
DNA (1281bp) protein (427aa)
pyrC; dihydroorotase, multifunctional complex type (EC:3.5.2.3)
Putative Dihydroorotase-like protein (Aspartate carbamoyltransferase 44 kDa Non-catalytic chain) PyrC n=1 Tax=mine drainage metagenome RepID=E6QWY6_9ZZZZ
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
RTP_02272018_0_2um_scaffold_746_25
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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23498..23743
DNA (246bp) protein (82aa)
Antitoxin of a toxin/antitoxin system protein n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IRG7_9GAMM
Antitoxin of a toxin/antitoxin system protein {ECO:0000313|EMBL:EGW22178.1}; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
Prevent-host-death protein Phd/YefM
RTP_02272018_0_2um_scaffold_746_26
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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23740..24126
DNA (387bp) protein (129aa)
PilT protein domain protein n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IRG8_9GAMM
pilT; Pilus retraction motor protein PilT
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
RTP_02272018_0_2um_scaffold_746_27
unknown

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24664..24828
DNA (165bp) protein (55aa)

This feature has no annotations

RTP_02272018_0_2um_scaffold_746_28

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24780..25565
DNA (786bp) protein (262aa)
Putative Porin n=1 Tax=mine drainage metagenome RepID=E6QX98_9ZZZZ
Putative Porin {ECO:0000313|EMBL:CBI11872.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
outer membrane protein (porin)
Displaying 29 items

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