ggKbase home page

RTP_02272018_0_2um_scaffold_1364

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_02272018_0_2um_scaffold_1364_1

Not on your lists

comp(3..371)
DNA (369bp) protein (123aa)
Putative translation factor (SUA5) n=1 Tax=mine drainage metagenome RepID=E6QS68_9ZZZZ
Putative translation factor (SUA5) {ECO:0000313|EMBL:CBI10090.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Sua5/YciO/YrdC/YwlC
RTP_02272018_0_2um_scaffold_1364_2
R_Gallionellales_60_31, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(371..1225)
DNA (855bp) protein (285aa)
Putative Phosphoesterase PHP family n=1 Tax=mine drainage metagenome RepID=E6QS67_9ZZZZ
php domain-containing protein
Tax=RIFCSPLOWO2_02_Gallionellales_60_31_curated
RTP_02272018_0_2um_scaffold_1364_3
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1283..2017
DNA (735bp) protein (245aa)
Uncharacterized protein n=2 Tax=Acidithiobacillus caldus RepID=C6NYK7_9GAMM
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RTP_02272018_0_2um_scaffold_1364_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2020..2556
DNA (537bp) protein (179aa)
Probable intracellular septation protein A n=1 Tax=Burkholderia sp. (strain CCGE1002) RepID=D5W7Z9_BURSC
intracellular septation protein A
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
RTP_02272018_0_2um_scaffold_1364_5
Alcanivorax sp. DG881, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2553..2861
DNA (309bp) protein (103aa)
YCII-related domain superfamily n=1 Tax=Alcanivorax sp. DG881 RepID=B4X1S6_9GAMM
YCII-related domain superfamily {ECO:0000313|EMBL:EDX91131.1}; TaxID=236097 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax sp. DG881.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_1364_6
Aquitalea magnusonii, Aquitalea, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2858..3121
DNA (264bp) protein (88aa)
Putative stress-induced morphogen BolA protein n=1 Tax=mine drainage metagenome RepID=E6QS64_9ZZZZ
BolA family protein {ECO:0000313|EMBL:KJV33435.1}; TaxID=332411 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Aquitalea.;" source="Aquitalea magnusonii.;"
hypothetical protein
RTP_02272018_0_2um_scaffold_1364_7

Not on your lists

3146..3994
DNA (849bp) protein (283aa)
Putative PpiC-type peptidyl-prolyl cis-trans isomerase {ECO:0000313|EMBL:CBI10085.1}; EC=5.2.1.8 {ECO:0000313|EMBL:CBI10085.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Putative PpiC-type peptidyl-prolyl cis-trans isomerase n=1 Tax=mine drainage metagenome RepID=E6QS63_9ZZZZ
PpiC-type peptidyl-prolyl cis-trans isomerase
RTP_02272018_0_2um_scaffold_1364_8

Not on your lists

4067..4291
DNA (225bp) protein (75aa)
Protein Hfq n=1 Tax=mine drainage metagenome RepID=E6QS62_9ZZZZ
Protein Hfq {ECO:0000313|EMBL:CBI10084.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
RNA-binding protein Hfq
RTP_02272018_0_2um_scaffold_1364_9
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4315..6954)
DNA (2640bp) protein (880aa)
pepN; aminopeptidase (EC:3.4.11.2)
Aminopeptidase N (Alpha-aminoacylpeptide hydrolase) {ECO:0000313|EMBL:CAL60776.1}; EC=3.4.11.2 {ECO:0000313|EMBL:CAL60776.1};; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
aminopeptidase N n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI000381578E
RTP_02272018_0_2um_scaffold_1364_10

Not on your lists

comp(6964..8949)
DNA (1986bp) protein (662aa)
peptide ABC transporter ATPase (EC:3.6.3.24 3.6.3.31)
Putative peptide transport fused subunits of ABC superfamily: ATP-binding components n=1 Tax=mine drainage metagenome RepID=E6QRW8_9ZZZZ
Putative peptide transport fused subunits of ABC superfamily: ATP-binding components {ECO:0000313|EMBL:CBI09990.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
RTP_02272018_0_2um_scaffold_1364_11
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8949..10328)
DNA (1380bp) protein (460aa)
Binding-protein dependent transport system inner membrane protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AG83_9PROT
binding-protein dependent transport system inner membrane protein
Binding-protein dependent transport system inner membrane protein {ECO:0000313|EMBL:BAN34996.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_02272018_0_2um_scaffold_1364_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10325..11302)
DNA (978bp) protein (326aa)
Oligopeptide ABC transporter permease protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SIA5_THIDA
oligopeptide ABC transporter permease
Oligopeptide ABC transporter permease protein {ECO:0000313|EMBL:AAZ97623.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_1364_13
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11299..13446)
DNA (2148bp) protein (716aa)
peptide ABC transporter substrate-binding protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037035E4
oligopeptide ABC transporter periplasmic protein
Oligopeptide ABC transporter periplasmic component {ECO:0000313|EMBL:AAZ97624.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_02272018_0_2um_scaffold_1364_14
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13519..13611
DNA (93bp) protein (31aa)
fabI; enoyl-ACP reductase (EC:1.3.1.10)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=1388764 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania ferrooxidans EGD-HP2.;"
enoyl-ACP reductase n=1 Tax=beta proteobacterium L13 RepID=UPI000380413E
Displaying 14 items

View Taxonomy